Coverage for src/ptf_tools/views/base_views.py: 17%

1646 statements  

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1import io 

2import json 

3import os 

4import re 

5from datetime import datetime 

6from itertools import groupby 

7 

8import jsonpickle 

9import requests 

10from allauth.account.signals import user_signed_up 

11from braces.views import CsrfExemptMixin, LoginRequiredMixin, StaffuserRequiredMixin 

12from celery import Celery, current_app 

13from django.conf import settings 

14from django.contrib import messages 

15from django.contrib.auth.mixins import UserPassesTestMixin 

16from django.db.models import Q 

17from django.http import ( 

18 Http404, 

19 HttpRequest, 

20 HttpResponse, 

21 HttpResponseRedirect, 

22 HttpResponseServerError, 

23 JsonResponse, 

24) 

25from django.shortcuts import get_object_or_404, redirect, render 

26from django.urls import resolve, reverse 

27from django.utils import timezone 

28from django.views.decorators.http import require_http_methods 

29from django.views.generic import ListView, TemplateView, View 

30from django.views.generic.base import RedirectView 

31from django.views.generic.detail import SingleObjectMixin 

32from django.views.generic.edit import CreateView, FormView, UpdateView 

33from django_celery_results.models import TaskResult 

34from external.back.crossref.doi import checkDOI, recordDOI, recordPendingPublication 

35from extra_views import ( 

36 CreateWithInlinesView, 

37 InlineFormSetFactory, 

38 NamedFormsetsMixin, 

39 UpdateWithInlinesView, 

40) 

41from ptf import model_data_converter, model_helpers, tex, utils 

42from ptf.cmds import ptf_cmds, xml_cmds 

43from ptf.cmds.base_cmds import make_int 

44from ptf.cmds.xml.jats.builder.issue import build_title_xml 

45from ptf.cmds.xml.xml_utils import replace_html_entities 

46from ptf.display import resolver 

47from ptf.exceptions import DOIException, PDFException, ServerUnderMaintenance 

48from ptf.model_data import create_issuedata, create_publisherdata, create_titledata 

49from ptf.models import ( 

50 Abstract, 

51 Article, 

52 BibItem, 

53 BibItemId, 

54 Collection, 

55 Container, 

56 ExtId, 

57 ExtLink, 

58 Resource, 

59 ResourceId, 

60 Title, 

61) 

62from ptf.views import ArticleEditFormWithVueAPIView 

63from ptf_back.cmds.xml_cmds import updateBibitemCitationXmlCmd 

64from pubmed.views import recordPubmed 

65from requests import Timeout 

66from task.tasks.archiving_tasks import archive_resource 

67 

68from comments_moderation.utils import get_comments_for_home, is_comment_moderator 

69from history import models as history_models 

70from history import views as history_views 

71from history.utils import get_gap, get_history_last_event_by, get_last_unsolved_error 

72from ptf_tools.doaj import doaj_pid_register 

73from ptf_tools.forms import ( 

74 BibItemIdForm, 

75 CollectionForm, 

76 ContainerForm, 

77 DiffContainerForm, 

78 ExtIdForm, 

79 ExtLinkForm, 

80 FormSetHelper, 

81 ImportArticleForm, 

82 ImportContainerForm, 

83 ImportEditflowArticleForm, 

84 PtfFormHelper, 

85 PtfLargeModalFormHelper, 

86 PtfModalFormHelper, 

87 RegisterPubmedForm, 

88 ResourceIdForm, 

89 get_article_choices, 

90) 

91from ptf_tools.indexingChecker import ReferencingCheckerAds, ReferencingCheckerWos 

92from ptf_tools.models import ResourceInNumdam 

93from ptf_tools.signals import update_user_from_invite 

94from ptf_tools.tasks import ( 

95 archive_numdam_collection, 

96 archive_numdam_collections, 

97) 

98from ptf_tools.templatetags.tools_helpers import get_authorized_collections 

99from ptf_tools.utils import is_authorized_editor 

100 

101 

102def view_404(request: HttpRequest): 

103 """ 

104 Dummy view raising HTTP 404 exception. 

105 """ 

106 raise Http404 

107 

108 

109def check_collection(collection, server_url, server_type): 

110 """ 

111 Check if a collection exists on a serveur (test/prod) 

112 and upload the collection (XML, image) if necessary 

113 """ 

114 

115 url = server_url + reverse("collection_status", kwargs={"colid": collection.pid}) 

116 response = requests.get(url, verify=False) 

117 # First, upload the collection XML 

118 xml = ptf_cmds.exportPtfCmd({"pid": collection.pid}).do() 

119 body = xml.encode("utf8") 

120 

121 url = server_url + reverse("upload-serials") 

122 if response.status_code == 200: 

123 # PUT http verb is used for update 

124 response = requests.put(url, data=body, verify=False) 

125 else: 

126 # POST http verb is used for creation 

127 response = requests.post(url, data=body, verify=False) 

128 

129 # Second, copy the collection images 

130 # There is no need to copy files for the test server 

131 # Files were already copied in /mersenne_test_data during the ptf_tools import 

132 # We only need to copy files from /mersenne_test_data to 

133 # /mersenne_prod_data during an upload to prod 

134 if server_type == "website": 

135 resolver.copy_binary_files( 

136 collection, settings.MERSENNE_TEST_DATA_FOLDER, settings.MERSENNE_PROD_DATA_FOLDER 

137 ) 

138 elif server_type == "numdam": 

139 from_folder = settings.MERSENNE_PROD_DATA_FOLDER 

140 if collection.pid in settings.NUMDAM_COLLECTIONS: 

141 from_folder = settings.MERSENNE_TEST_DATA_FOLDER 

142 

143 resolver.copy_binary_files(collection, from_folder, settings.NUMDAM_DATA_ROOT) 

144 

145 

146def check_lock(): 

147 return hasattr(settings, "LOCK_FILE") and os.path.isfile(settings.LOCK_FILE) 

148 

149 

150def load_cedrics_article_choices(request): 

151 colid = request.GET.get("colid") 

152 issue = request.GET.get("issue") 

153 article_choices = get_article_choices(colid, issue) 

154 return render( 

155 request, "cedrics_article_dropdown_list_options.html", {"article_choices": article_choices} 

156 ) 

157 

158 

159class ImportCedricsArticleFormView(FormView): 

160 template_name = "import_article.html" 

161 form_class = ImportArticleForm 

162 

163 def dispatch(self, request, *args, **kwargs): 

164 self.colid = self.kwargs["colid"] 

165 return super().dispatch(request, *args, **kwargs) 

166 

167 def get_success_url(self): 

168 if self.colid: 

169 return reverse("collection-detail", kwargs={"pid": self.colid}) 

170 return "/" 

171 

172 def get_context_data(self, **kwargs): 

173 context = super().get_context_data(**kwargs) 

174 context["colid"] = self.colid 

175 context["helper"] = PtfModalFormHelper 

176 return context 

177 

178 def get_form_kwargs(self): 

179 kwargs = super().get_form_kwargs() 

180 kwargs["colid"] = self.colid 

181 return kwargs 

182 

183 def form_valid(self, form): 

184 self.issue = form.cleaned_data["issue"] 

185 self.article = form.cleaned_data["article"] 

186 return super().form_valid(form) 

187 

188 def import_cedrics_article(self, *args, **kwargs): 

189 cmd = xml_cmds.addorUpdateCedricsArticleXmlCmd( 

190 {"container_pid": self.issue_pid, "article_folder_name": self.article_pid} 

191 ) 

192 cmd.do() 

193 

194 def post(self, request, *args, **kwargs): 

195 self.colid = self.kwargs.get("colid", None) 

196 issue = request.POST["issue"] 

197 self.article_pid = request.POST["article"] 

198 self.issue_pid = os.path.basename(os.path.dirname(issue)) 

199 

200 import_args = [self] 

201 import_kwargs = {} 

202 

203 try: 

204 _, status, message = history_views.execute_and_record_func( 

205 "import", 

206 f"{self.issue_pid} / {self.article_pid}", 

207 self.colid, 

208 self.import_cedrics_article, 

209 "", 

210 False, 

211 None, 

212 None, 

213 *import_args, 

214 **import_kwargs, 

215 ) 

216 

217 messages.success( 

218 self.request, f"L'article {self.article_pid} a été importé avec succès" 

219 ) 

220 

221 except Exception as exception: 

222 messages.error( 

223 self.request, 

224 f"Echec de l'import de l'article {self.article_pid} : {str(exception)}", 

225 ) 

226 

227 return redirect(self.get_success_url()) 

228 

229 

230class ImportCedricsIssueView(FormView): 

231 template_name = "import_container.html" 

232 form_class = ImportContainerForm 

233 

234 def dispatch(self, request, *args, **kwargs): 

235 self.colid = self.kwargs["colid"] 

236 self.to_appear = self.request.GET.get("to_appear", False) 

237 return super().dispatch(request, *args, **kwargs) 

238 

239 def get_success_url(self): 

240 if self.filename: 

241 return reverse( 

242 "diff_cedrics_issue", kwargs={"colid": self.colid, "filename": self.filename} 

243 ) 

244 return "/" 

245 

246 def get_context_data(self, **kwargs): 

247 context = super().get_context_data(**kwargs) 

248 context["colid"] = self.colid 

249 context["helper"] = PtfModalFormHelper 

250 return context 

251 

252 def get_form_kwargs(self): 

253 kwargs = super().get_form_kwargs() 

254 kwargs["colid"] = self.colid 

255 kwargs["to_appear"] = self.to_appear 

256 return kwargs 

257 

258 def form_valid(self, form): 

259 self.filename = form.cleaned_data["filename"].split("/")[-1] 

260 return super().form_valid(form) 

261 

262 

263class DiffCedricsIssueView(FormView): 

264 template_name = "diff_container_form.html" 

265 form_class = DiffContainerForm 

266 diffs = None 

267 xissue = None 

268 xissue_encoded = None 

269 

270 def get_success_url(self): 

271 return reverse("collection-detail", kwargs={"pid": self.colid}) 

272 

273 def dispatch(self, request, *args, **kwargs): 

274 self.colid = self.kwargs["colid"] 

275 # self.filename = self.kwargs['filename'] 

276 return super().dispatch(request, *args, **kwargs) 

277 

278 def get(self, request, *args, **kwargs): 

279 self.filename = request.GET["filename"] 

280 self.remove_mail = request.GET.get("remove_email", "off") 

281 self.remove_date_prod = request.GET.get("remove_date_prod", "off") 

282 self.remove_email = self.remove_mail == "on" 

283 self.remove_date_prod = self.remove_date_prod == "on" 

284 

285 try: 

286 result, status, message = history_views.execute_and_record_func( 

287 "import", 

288 os.path.basename(self.filename), 

289 self.colid, 

290 self.diff_cedrics_issue, 

291 "", 

292 True, 

293 ) 

294 except Exception as exception: 

295 pid = self.filename.split("/")[-1] 

296 messages.error(self.request, f"Echec de l'import du volume {pid} : {exception}") 

297 return HttpResponseRedirect(self.get_success_url()) 

298 

299 no_conflict = result[0] 

300 self.diffs = result[1] 

301 self.xissue = result[2] 

302 

303 if no_conflict: 

304 # Proceed with the import 

305 self.form_valid(self.get_form()) 

306 return redirect(self.get_success_url()) 

307 else: 

308 # Display the diff template 

309 self.xissue_encoded = jsonpickle.encode(self.xissue) 

310 

311 return super().get(request, *args, **kwargs) 

312 

313 def post(self, request, *args, **kwargs): 

314 self.filename = request.POST["filename"] 

315 data = request.POST["xissue_encoded"] 

316 self.xissue = jsonpickle.decode(data) 

317 

318 return super().post(request, *args, **kwargs) 

319 

320 def get_context_data(self, **kwargs): 

321 context = super().get_context_data(**kwargs) 

322 context["colid"] = self.colid 

323 context["diff"] = self.diffs 

324 context["filename"] = self.filename 

325 context["xissue_encoded"] = self.xissue_encoded 

326 return context 

327 

328 def get_form_kwargs(self): 

329 kwargs = super().get_form_kwargs() 

330 kwargs["colid"] = self.colid 

331 return kwargs 

332 

333 def diff_cedrics_issue(self, *args, **kwargs): 

334 params = { 

335 "colid": self.colid, 

336 "input_file": self.filename, 

337 "remove_email": self.remove_mail, 

338 "remove_date_prod": self.remove_date_prod, 

339 "diff_only": True, 

340 } 

341 

342 if settings.IMPORT_CEDRICS_DIRECTLY: 

343 params["is_seminar"] = self.colid in settings.MERSENNE_SEMINARS 

344 params["force_dois"] = self.colid not in settings.NUMDAM_COLLECTIONS 

345 cmd = xml_cmds.importCedricsIssueDirectlyXmlCmd(params) 

346 else: 

347 cmd = xml_cmds.importCedricsIssueXmlCmd(params) 

348 

349 result = cmd.do() 

350 if len(cmd.warnings) > 0 and self.request.user.is_superuser: 

351 messages.warning( 

352 self.request, message="Balises non parsées lors de l'import : %s" % cmd.warnings 

353 ) 

354 

355 return result 

356 

357 def import_cedrics_issue(self, *args, **kwargs): 

358 # modify xissue with data_issue if params to override 

359 if "import_choice" in kwargs and kwargs["import_choice"] == "1": 

360 issue = model_helpers.get_container(self.xissue.pid) 

361 if issue: 

362 data_issue = model_data_converter.db_to_issue_data(issue) 

363 for xarticle in self.xissue.articles: 

364 filter_articles = [ 

365 article for article in data_issue.articles if article.doi == xarticle.doi 

366 ] 

367 if len(filter_articles) > 0: 

368 db_article = filter_articles[0] 

369 xarticle.coi_statement = db_article.coi_statement 

370 xarticle.kwds = db_article.kwds 

371 xarticle.contrib_groups = db_article.contrib_groups 

372 

373 params = { 

374 "colid": self.colid, 

375 "xissue": self.xissue, 

376 "input_file": self.filename, 

377 } 

378 

379 if settings.IMPORT_CEDRICS_DIRECTLY: 

380 params["is_seminar"] = self.colid in settings.MERSENNE_SEMINARS 

381 params["add_body_html"] = self.colid not in settings.NUMDAM_COLLECTIONS 

382 cmd = xml_cmds.importCedricsIssueDirectlyXmlCmd(params) 

383 else: 

384 cmd = xml_cmds.importCedricsIssueXmlCmd(params) 

385 

386 cmd.do() 

387 

388 def form_valid(self, form): 

389 if "import_choice" in self.kwargs and self.kwargs["import_choice"] == "1": 

390 import_kwargs = {"import_choice": form.cleaned_data["import_choice"]} 

391 else: 

392 import_kwargs = {} 

393 import_args = [self] 

394 

395 try: 

396 _, status, message = history_views.execute_and_record_func( 

397 "import", 

398 self.xissue.pid, 

399 self.kwargs["colid"], 

400 self.import_cedrics_issue, 

401 "", 

402 False, 

403 None, 

404 None, 

405 *import_args, 

406 **import_kwargs, 

407 ) 

408 except Exception as exception: 

409 messages.error( 

410 self.request, f"Echec de l'import du volume {self.xissue.pid} : " + str(exception) 

411 ) 

412 return super().form_invalid(form) 

413 

414 messages.success(self.request, f"Le volume {self.xissue.pid} a été importé avec succès") 

415 return super().form_valid(form) 

416 

417 

418class ImportEditflowArticleFormView(FormView): 

419 template_name = "import_editflow_article.html" 

420 form_class = ImportEditflowArticleForm 

421 

422 def dispatch(self, request, *args, **kwargs): 

423 self.colid = self.kwargs["colid"] 

424 return super().dispatch(request, *args, **kwargs) 

425 

426 def get_context_data(self, **kwargs): 

427 context = super().get_context_data(**kwargs) 

428 context["colid"] = self.kwargs["colid"] 

429 context["helper"] = PtfLargeModalFormHelper 

430 return context 

431 

432 def get_success_url(self): 

433 if self.colid: 

434 return reverse("collection-detail", kwargs={"pid": self.colid}) 

435 return "/" 

436 

437 def post(self, request, *args, **kwargs): 

438 self.colid = self.kwargs.get("colid", None) 

439 try: 

440 if not self.colid: 

441 raise ValueError("Missing collection id") 

442 

443 issue_name = settings.ISSUE_PENDING_PUBLICATION_PIDS.get(self.colid) 

444 if not issue_name: 

445 raise ValueError( 

446 "Issue not found in Pending Publications PIDs. Did you forget to add it?" 

447 ) 

448 

449 issue = model_helpers.get_container(issue_name) 

450 if not issue: 

451 raise ValueError("No issue found") 

452 

453 editflow_xml_file = request.FILES.get("editflow_xml_file") 

454 if not editflow_xml_file: 

455 raise ValueError("The file you specified couldn't be found") 

456 

457 body = editflow_xml_file.read().decode("utf-8") 

458 

459 cmd = xml_cmds.addArticleXmlCmd( 

460 { 

461 "body": body, 

462 "issue": issue, 

463 "assign_doi": True, 

464 "standalone": True, 

465 "from_folder": settings.RESOURCES_ROOT, 

466 } 

467 ) 

468 cmd.set_collection(issue.get_collection()) 

469 cmd.do() 

470 

471 messages.success( 

472 request, 

473 f'Editflow article successfully imported into issue "{issue_name}"', 

474 ) 

475 

476 except Exception as exception: 

477 messages.error( 

478 request, 

479 f"Import failed: {str(exception)}", 

480 ) 

481 

482 return redirect(self.get_success_url()) 

483 

484 

485class BibtexAPIView(View): 

486 def get(self, request, *args, **kwargs): 

487 pid = self.kwargs.get("pid", None) 

488 all_bibtex = "" 

489 if pid: 

490 article = model_helpers.get_article(pid) 

491 if article: 

492 for bibitem in article.bibitem_set.all(): 

493 bibtex_array = bibitem.get_bibtex() 

494 last = len(bibtex_array) 

495 i = 1 

496 for bibtex in bibtex_array: 

497 if i > 1 and i < last: 

498 all_bibtex += " " 

499 all_bibtex += bibtex + "\n" 

500 i += 1 

501 

502 data = {"bibtex": all_bibtex} 

503 return JsonResponse(data) 

504 

505 

506class MatchingAPIView(View): 

507 def get(self, request, *args, **kwargs): 

508 pid = self.kwargs.get("pid", None) 

509 

510 url = settings.MATCHING_URL 

511 headers = {"Content-Type": "application/xml"} 

512 

513 body = ptf_cmds.exportPtfCmd({"pid": pid, "with_body": False}).do() 

514 

515 if settings.DEBUG: 

516 print("Issue exported to /tmp/issue.xml") 

517 f = open("/tmp/issue.xml", "w") 

518 f.write(body.encode("utf8")) 

519 f.close() 

520 

521 r = requests.post(url, data=body.encode("utf8"), headers=headers) 

522 body = r.text.encode("utf8") 

523 data = {"status": r.status_code, "message": body[:1000]} 

524 

525 if settings.DEBUG: 

526 print("Matching received, new issue exported to /tmp/issue1.xml") 

527 f = open("/tmp/issue1.xml", "w") 

528 text = body 

529 f.write(text) 

530 f.close() 

531 

532 resource = model_helpers.get_resource(pid) 

533 obj = resource.cast() 

534 colid = obj.get_collection().pid 

535 

536 full_text_folder = settings.CEDRAM_XML_FOLDER + colid + "/plaintext/" 

537 

538 cmd = xml_cmds.addOrUpdateIssueXmlCmd( 

539 {"body": body, "assign_doi": True, "full_text_folder": full_text_folder} 

540 ) 

541 cmd.do() 

542 

543 print("Matching finished") 

544 return JsonResponse(data) 

545 

546 

547class ImportAllAPIView(View): 

548 def internal_do(self, *args, **kwargs): 

549 pid = self.kwargs.get("pid", None) 

550 

551 root_folder = os.path.join(settings.MATHDOC_ARCHIVE_FOLDER, pid) 

552 if not os.path.isdir(root_folder): 

553 raise ValueError(root_folder + " does not exist") 

554 

555 resource = model_helpers.get_resource(pid) 

556 if not resource: 

557 file = os.path.join(root_folder, pid + ".xml") 

558 body = utils.get_file_content_in_utf8(file) 

559 journals = xml_cmds.addCollectionsXmlCmd( 

560 { 

561 "body": body, 

562 "from_folder": settings.MATHDOC_ARCHIVE_FOLDER, 

563 "to_folder": settings.MERSENNE_TEST_DATA_FOLDER, 

564 } 

565 ).do() 

566 if not journals: 

567 raise ValueError(file + " does not contain a collection") 

568 resource = journals[0] 

569 # resolver.copy_binary_files( 

570 # resource, 

571 # settings.MATHDOC_ARCHIVE_FOLDER, 

572 # settings.MERSENNE_TEST_DATA_FOLDER) 

573 

574 obj = resource.cast() 

575 

576 if obj.classname != "Collection": 

577 raise ValueError(pid + " does not contain a collection") 

578 

579 cmd = xml_cmds.collectEntireCollectionXmlCmd( 

580 {"pid": pid, "folder": settings.MATHDOC_ARCHIVE_FOLDER} 

581 ) 

582 pids = cmd.do() 

583 

584 return pids 

585 

586 def get(self, request, *args, **kwargs): 

587 pid = self.kwargs.get("pid", None) 

588 

589 try: 

590 pids, status, message = history_views.execute_and_record_func( 

591 "import", pid, pid, self.internal_do 

592 ) 

593 except Timeout as exception: 

594 return HttpResponse(exception, status=408) 

595 except Exception as exception: 

596 return HttpResponseServerError(exception) 

597 

598 data = {"message": message, "ids": pids, "status": status} 

599 return JsonResponse(data) 

600 

601 

602class DeployAllAPIView(View): 

603 def internal_do(self, *args, **kwargs): 

604 pid = self.kwargs.get("pid", None) 

605 site = self.kwargs.get("site", None) 

606 

607 pids = [] 

608 

609 collection = model_helpers.get_collection(pid) 

610 if not collection: 

611 raise RuntimeError(pid + " does not exist") 

612 

613 if site == "numdam": 

614 server_url = settings.NUMDAM_PRE_URL 

615 elif site != "ptf_tools": 

616 server_url = getattr(collection, site)() 

617 if not server_url: 

618 raise RuntimeError("The collection has no " + site) 

619 

620 if site != "ptf_tools": 

621 # check if the collection exists on the server 

622 # if not, check_collection will upload the collection (XML, 

623 # image...) 

624 check_collection(collection, server_url, site) 

625 

626 for issue in collection.content.all(): 

627 if site != "website" or (site == "website" and issue.are_all_articles_published()): 

628 pids.append(issue.pid) 

629 

630 return pids 

631 

632 def get(self, request, *args, **kwargs): 

633 pid = self.kwargs.get("pid", None) 

634 site = self.kwargs.get("site", None) 

635 

636 try: 

637 pids, status, message = history_views.execute_and_record_func( 

638 "deploy", pid, pid, self.internal_do, site 

639 ) 

640 except Timeout as exception: 

641 return HttpResponse(exception, status=408) 

642 except Exception as exception: 

643 return HttpResponseServerError(exception) 

644 

645 data = {"message": message, "ids": pids, "status": status} 

646 return JsonResponse(data) 

647 

648 

649class AddIssuePDFView(View): 

650 def __init(self, *args, **kwargs): 

651 super().__init__(*args, **kwargs) 

652 self.pid = None 

653 self.issue = None 

654 self.collection = None 

655 self.site = "test_website" 

656 

657 def post_to_site(self, url): 

658 response = requests.post(url, verify=False) 

659 status = response.status_code 

660 if not (199 < status < 205): 

661 messages.error(self.request, response.text) 

662 if status == 503: 

663 raise ServerUnderMaintenance(response.text) 

664 else: 

665 raise RuntimeError(response.text) 

666 

667 def internal_do(self, *args, **kwargs): 

668 """ 

669 Called by history_views.execute_and_record_func to do the actual job. 

670 """ 

671 

672 issue_pid = self.issue.pid 

673 colid = self.collection.pid 

674 

675 if self.site == "website": 

676 # Copy the PDF from the test to the production folder 

677 resolver.copy_binary_files( 

678 self.issue, settings.MERSENNE_TEST_DATA_FOLDER, settings.MERSENNE_PROD_DATA_FOLDER 

679 ) 

680 else: 

681 # Copy the PDF from the cedram to the test folder 

682 from_folder = resolver.get_cedram_issue_tex_folder(colid, issue_pid) 

683 from_path = os.path.join(from_folder, issue_pid + ".pdf") 

684 if not os.path.isfile(from_path): 

685 raise Http404(f"{from_path} does not exist") 

686 

687 to_path = resolver.get_disk_location( 

688 settings.MERSENNE_TEST_DATA_FOLDER, colid, "pdf", issue_pid 

689 ) 

690 resolver.copy_file(from_path, to_path) 

691 

692 url = reverse("issue_pdf_upload", kwargs={"pid": self.issue.pid}) 

693 

694 if self.site == "test_website": 

695 # Post to ptf-tools: it will add a Datastream to the issue 

696 absolute_url = self.request.build_absolute_uri(url) 

697 self.post_to_site(absolute_url) 

698 

699 server_url = getattr(self.collection, self.site)() 

700 absolute_url = server_url + url 

701 # Post to the test or production website 

702 self.post_to_site(absolute_url) 

703 

704 def get(self, request, *args, **kwargs): 

705 """ 

706 Send an issue PDF to the test or production website 

707 :param request: pid (mandatory), site (optional) "test_website" (default) or 'website' 

708 :param args: 

709 :param kwargs: 

710 :return: 

711 """ 

712 if check_lock(): 

713 m = "Trammel is under maintenance. Please try again later." 

714 messages.error(self.request, m) 

715 return JsonResponse({"message": m, "status": 503}) 

716 

717 self.pid = self.kwargs.get("pid", None) 

718 self.site = self.kwargs.get("site", "test_website") 

719 

720 self.issue = model_helpers.get_container(self.pid) 

721 if not self.issue: 

722 raise Http404(f"{self.pid} does not exist") 

723 self.collection = self.issue.get_top_collection() 

724 

725 try: 

726 pids, status, message = history_views.execute_and_record_func( 

727 "deploy", 

728 self.pid, 

729 self.collection.pid, 

730 self.internal_do, 

731 f"add issue PDF to {self.site}", 

732 ) 

733 

734 except Timeout as exception: 

735 return HttpResponse(exception, status=408) 

736 except Exception as exception: 

737 return HttpResponseServerError(exception) 

738 

739 data = {"message": message, "status": status} 

740 return JsonResponse(data) 

741 

742 

743class ArchiveAllAPIView(View): 

744 """ 

745 - archive le xml de la collection ainsi que les binaires liés 

746 - renvoie une liste de pid des issues de la collection qui seront ensuite archivés par appel JS 

747 @return array of issues pid 

748 """ 

749 

750 def internal_do(self, *args, **kwargs): 

751 collection = kwargs["collection"] 

752 pids = [] 

753 colid = collection.pid 

754 

755 logfile = os.path.join(settings.LOG_DIR, "archive.log") 

756 if os.path.isfile(logfile): 

757 os.remove(logfile) 

758 

759 ptf_cmds.exportPtfCmd( 

760 { 

761 "pid": colid, 

762 "export_folder": settings.MATHDOC_ARCHIVE_FOLDER, 

763 "with_binary_files": True, 

764 "for_archive": True, 

765 "binary_files_folder": settings.MERSENNE_PROD_DATA_FOLDER, 

766 } 

767 ).do() 

768 

769 cedramcls = os.path.join(settings.CEDRAM_TEX_FOLDER, "cedram.cls") 

770 if os.path.isfile(cedramcls): 

771 dest_folder = os.path.join(settings.MATHDOC_ARCHIVE_FOLDER, collection.pid, "src/tex") 

772 resolver.create_folder(dest_folder) 

773 resolver.copy_file(cedramcls, dest_folder) 

774 

775 for issue in collection.content.all(): 

776 qs = issue.article_set.filter( 

777 date_online_first__isnull=True, date_published__isnull=True 

778 ) 

779 if qs.count() == 0: 

780 pids.append(issue.pid) 

781 

782 return pids 

783 

784 def get(self, request, *args, **kwargs): 

785 pid = self.kwargs.get("pid", None) 

786 

787 collection = model_helpers.get_collection(pid) 

788 if not collection: 

789 return HttpResponse(f"{pid} does not exist", status=400) 

790 

791 dict_ = {"collection": collection} 

792 args_ = [self] 

793 

794 try: 

795 pids, status, message = history_views.execute_and_record_func( 

796 "archive", pid, pid, self.internal_do, "", False, None, None, *args_, **dict_ 

797 ) 

798 except Timeout as exception: 

799 return HttpResponse(exception, status=408) 

800 except Exception as exception: 

801 return HttpResponseServerError(exception) 

802 

803 data = {"message": message, "ids": pids, "status": status} 

804 return JsonResponse(data) 

805 

806 

807class CreateAllDjvuAPIView(View): 

808 def internal_do(self, *args, **kwargs): 

809 issue = kwargs["issue"] 

810 pids = [issue.pid] 

811 

812 for article in issue.article_set.all(): 

813 pids.append(article.pid) 

814 

815 return pids 

816 

817 def get(self, request, *args, **kwargs): 

818 pid = self.kwargs.get("pid", None) 

819 issue = model_helpers.get_container(pid) 

820 if not issue: 

821 raise Http404(f"{pid} does not exist") 

822 

823 try: 

824 dict_ = {"issue": issue} 

825 args_ = [self] 

826 

827 pids, status, message = history_views.execute_and_record_func( 

828 "numdam", 

829 pid, 

830 issue.get_collection().pid, 

831 self.internal_do, 

832 "", 

833 False, 

834 None, 

835 None, 

836 *args_, 

837 **dict_, 

838 ) 

839 except Exception as exception: 

840 return HttpResponseServerError(exception) 

841 

842 data = {"message": message, "ids": pids, "status": status} 

843 return JsonResponse(data) 

844 

845 

846class ImportJatsContainerAPIView(View): 

847 def internal_do(self, *args, **kwargs): 

848 pid = self.kwargs.get("pid", None) 

849 colid = self.kwargs.get("colid", None) 

850 

851 if pid and colid: 

852 body = resolver.get_archive_body(settings.MATHDOC_ARCHIVE_FOLDER, colid, pid) 

853 

854 cmd = xml_cmds.addOrUpdateContainerXmlCmd( 

855 { 

856 "body": body, 

857 "from_folder": settings.MATHDOC_ARCHIVE_FOLDER, 

858 "to_folder": settings.MERSENNE_TEST_DATA_FOLDER, 

859 "backup_folder": settings.MATHDOC_ARCHIVE_FOLDER, 

860 } 

861 ) 

862 container = cmd.do() 

863 if len(cmd.warnings) > 0: 

864 messages.warning( 

865 self.request, 

866 message="Balises non parsées lors de l'import : %s" % cmd.warnings, 

867 ) 

868 

869 if not container: 

870 raise RuntimeError("Error: the container " + pid + " was not imported") 

871 

872 # resolver.copy_binary_files( 

873 # container, 

874 # settings.MATHDOC_ARCHIVE_FOLDER, 

875 # settings.MERSENNE_TEST_DATA_FOLDER) 

876 # 

877 # for article in container.article_set.all(): 

878 # resolver.copy_binary_files( 

879 # article, 

880 # settings.MATHDOC_ARCHIVE_FOLDER, 

881 # settings.MERSENNE_TEST_DATA_FOLDER) 

882 else: 

883 raise RuntimeError("colid or pid are not defined") 

884 

885 def get(self, request, *args, **kwargs): 

886 pid = self.kwargs.get("pid", None) 

887 colid = self.kwargs.get("colid", None) 

888 

889 try: 

890 _, status, message = history_views.execute_and_record_func( 

891 "import", pid, colid, self.internal_do 

892 ) 

893 except Timeout as exception: 

894 return HttpResponse(exception, status=408) 

895 except Exception as exception: 

896 return HttpResponseServerError(exception) 

897 

898 data = {"message": message, "status": status} 

899 return JsonResponse(data) 

900 

901 

902class DeployCollectionAPIView(View): 

903 # Update collection.xml on a site (with its images) 

904 

905 def internal_do(self, *args, **kwargs): 

906 colid = self.kwargs.get("colid", None) 

907 site = self.kwargs.get("site", None) 

908 

909 collection = model_helpers.get_collection(colid) 

910 if not collection: 

911 raise RuntimeError(f"{colid} does not exist") 

912 

913 if site == "numdam": 

914 server_url = settings.NUMDAM_PRE_URL 

915 else: 

916 server_url = getattr(collection, site)() 

917 if not server_url: 

918 raise RuntimeError(f"The collection has no {site}") 

919 

920 # check_collection creates or updates the collection (XML, image...) 

921 check_collection(collection, server_url, site) 

922 

923 def get(self, request, *args, **kwargs): 

924 colid = self.kwargs.get("colid", None) 

925 site = self.kwargs.get("site", None) 

926 

927 try: 

928 _, status, message = history_views.execute_and_record_func( 

929 "deploy", colid, colid, self.internal_do, site 

930 ) 

931 except Timeout as exception: 

932 return HttpResponse(exception, status=408) 

933 except Exception as exception: 

934 return HttpResponseServerError(exception) 

935 

936 data = {"message": message, "status": status} 

937 return JsonResponse(data) 

938 

939 

940class DeployJatsResourceAPIView(View): 

941 # A RENOMMER aussi DeleteJatsContainerAPIView (mais fonctionne tel quel) 

942 

943 def internal_do(self, *args, **kwargs): 

944 pid = self.kwargs.get("pid", None) 

945 colid = self.kwargs.get("colid", None) 

946 site = self.kwargs.get("site", None) 

947 

948 if site == "ptf_tools": 

949 raise RuntimeError("Do not choose to deploy on PTF Tools") 

950 if check_lock(): 

951 msg = "Trammel is under maintenance. Please try again later." 

952 messages.error(self.request, msg) 

953 return JsonResponse({"messages": msg, "status": 503}) 

954 

955 resource = model_helpers.get_resource(pid) 

956 if not resource: 

957 raise RuntimeError(f"{pid} does not exist") 

958 

959 obj = resource.cast() 

960 article = None 

961 if obj.classname == "Article": 

962 article = obj 

963 container = article.my_container 

964 articles_to_deploy = [article] 

965 else: 

966 container = obj 

967 articles_to_deploy = container.article_set.exclude(do_not_publish=True) 

968 

969 if container.pid == settings.ISSUE_PENDING_PUBLICATION_PIDS.get(colid, None): 

970 raise RuntimeError("Pending publications should not be deployed") 

971 if site == "website" and article is not None and article.do_not_publish: 

972 raise RuntimeError(f"{pid} is marked as Do not publish") 

973 if site == "numdam" and article is not None: 

974 raise RuntimeError("You can only deploy issues to Numdam") 

975 

976 collection = container.get_top_collection() 

977 colid = collection.pid 

978 djvu_exception = None 

979 

980 if site == "numdam": 

981 server_url = settings.NUMDAM_PRE_URL 

982 ResourceInNumdam.objects.get_or_create(pid=container.pid) 

983 

984 # 06/12/2022: DjVu are no longer added with Mersenne articles 

985 # Add Djvu (before exporting the XML) 

986 if False and int(container.year) < 2020: 

987 for art in container.article_set.all(): 

988 try: 

989 cmd = ptf_cmds.addDjvuPtfCmd() 

990 cmd.set_resource(art) 

991 cmd.do() 

992 except Exception as e: 

993 # Djvu are optional. 

994 # Allow the deployment, but record the exception in the history 

995 djvu_exception = e 

996 else: 

997 server_url = getattr(collection, site)() 

998 if not server_url: 

999 raise RuntimeError(f"The collection has no {site}") 

1000 

1001 # check if the collection exists on the server 

1002 # if not, check_collection will upload the collection (XML, 

1003 # image...) 

1004 if article is None: 

1005 check_collection(collection, server_url, site) 

1006 

1007 with open(os.path.join(settings.LOG_DIR, "cmds.log"), "w", encoding="utf-8") as file_: 

1008 # Create/update deployed date and published date on all container articles 

1009 if site == "website": 

1010 file_.write( 

1011 "Create/Update deployed_date and date_published on all articles for {}\n".format( 

1012 pid 

1013 ) 

1014 ) 

1015 

1016 # create date_published on articles without date_published (ou date_online_first pour le volume 0) 

1017 cmd = ptf_cmds.publishResourcePtfCmd() 

1018 cmd.set_resource(resource) 

1019 updated_articles = cmd.do() 

1020 

1021 tex.create_frontpage(colid, container, updated_articles, test=False) 

1022 

1023 mersenneSite = model_helpers.get_site_mersenne(colid) 

1024 # create or update deployed_date on container and articles 

1025 model_helpers.update_deployed_date(obj, mersenneSite, None, file_) 

1026 

1027 for art in articles_to_deploy: 

1028 if art.doi and (art.date_published or art.date_online_first): 

1029 if art.my_container.year is None: 

1030 art.my_container.year = datetime.now().strftime("%Y") 

1031 # BUG ? update the container but no save() ? 

1032 

1033 file_.write( 

1034 "Publication date of {} : Online First: {}, Published: {}\n".format( 

1035 art.pid, art.date_online_first, art.date_published 

1036 ) 

1037 ) 

1038 

1039 if article is None: 

1040 resolver.copy_binary_files( 

1041 container, 

1042 settings.MERSENNE_TEST_DATA_FOLDER, 

1043 settings.MERSENNE_PROD_DATA_FOLDER, 

1044 ) 

1045 

1046 for art in articles_to_deploy: 

1047 resolver.copy_binary_files( 

1048 art, 

1049 settings.MERSENNE_TEST_DATA_FOLDER, 

1050 settings.MERSENNE_PROD_DATA_FOLDER, 

1051 ) 

1052 

1053 elif site == "test_website": 

1054 # create date_pre_published on articles without date_pre_published 

1055 cmd = ptf_cmds.publishResourcePtfCmd({"pre_publish": True}) 

1056 cmd.set_resource(resource) 

1057 updated_articles = cmd.do() 

1058 

1059 tex.create_frontpage(colid, container, updated_articles) 

1060 

1061 export_to_website = site == "website" 

1062 

1063 if article is None: 

1064 with_djvu = site == "numdam" 

1065 xml = ptf_cmds.exportPtfCmd( 

1066 { 

1067 "pid": pid, 

1068 "with_djvu": with_djvu, 

1069 "export_to_website": export_to_website, 

1070 } 

1071 ).do() 

1072 body = xml.encode("utf8") 

1073 

1074 if container.ctype == "issue" or container.ctype.startswith("issue_special"): 

1075 url = server_url + reverse("issue_upload") 

1076 else: 

1077 url = server_url + reverse("book_upload") 

1078 

1079 # verify=False: ignore TLS certificate 

1080 response = requests.post(url, data=body, verify=False) 

1081 # response = requests.post(url, files=files, verify=False) 

1082 else: 

1083 xml = ptf_cmds.exportPtfCmd( 

1084 { 

1085 "pid": pid, 

1086 "with_djvu": False, 

1087 "article_standalone": True, 

1088 "collection_pid": collection.pid, 

1089 "export_to_website": export_to_website, 

1090 "export_folder": settings.LOG_DIR, 

1091 } 

1092 ).do() 

1093 # Unlike containers that send their XML as the body of the POST request, 

1094 # articles send their XML as a file, because PCJ editor sends multiple files (XML, PDF, img) 

1095 xml_file = io.StringIO(xml) 

1096 files = {"xml": xml_file} 

1097 

1098 url = server_url + reverse( 

1099 "article_in_issue_upload", kwargs={"pid": container.pid} 

1100 ) 

1101 # verify=False: ignore TLS certificate 

1102 header = {} 

1103 response = requests.post(url, headers=header, files=files, verify=False) 

1104 

1105 status = response.status_code 

1106 

1107 if 199 < status < 205: 

1108 # There is no need to copy files for the test server 

1109 # Files were already copied in /mersenne_test_data during the ptf_tools import 

1110 # We only need to copy files from /mersenne_test_data to 

1111 # /mersenne_prod_data during an upload to prod 

1112 if site == "website": 

1113 # TODO mettre ici le record doi pour un issue publié 

1114 if container.doi: 

1115 recordDOI(container) 

1116 

1117 for art in articles_to_deploy: 

1118 # record DOI automatically when deploying in prod 

1119 

1120 if art.doi and art.allow_crossref(): 

1121 recordDOI(art) 

1122 

1123 if colid == "CRBIOL": 

1124 recordPubmed( 

1125 art, force_update=False, updated_articles=updated_articles 

1126 ) 

1127 

1128 if colid == "PCJ": 

1129 self.update_pcj_editor(updated_articles) 

1130 

1131 # Archive the container or the article 

1132 if article is None: 

1133 archive_resource.delay( 

1134 pid, 

1135 mathdoc_archive=settings.MATHDOC_ARCHIVE_FOLDER, 

1136 binary_files_folder=settings.MERSENNE_PROD_DATA_FOLDER, 

1137 ) 

1138 

1139 else: 

1140 archive_resource.delay( 

1141 pid, 

1142 mathdoc_archive=settings.MATHDOC_ARCHIVE_FOLDER, 

1143 binary_files_folder=settings.MERSENNE_PROD_DATA_FOLDER, 

1144 article_doi=article.doi, 

1145 ) 

1146 # cmd = ptf_cmds.archiveIssuePtfCmd({ 

1147 # "pid": pid, 

1148 # "export_folder": settings.MATHDOC_ARCHIVE_FOLDER, 

1149 # "binary_files_folder": settings.MERSENNE_PROD_DATA_FOLDER}) 

1150 # cmd.set_article(article) # set_article allows archiving only the article 

1151 # cmd.do() 

1152 

1153 elif site == "numdam": 

1154 from_folder = settings.MERSENNE_PROD_DATA_FOLDER 

1155 if colid in settings.NUMDAM_COLLECTIONS: 

1156 from_folder = settings.MERSENNE_TEST_DATA_FOLDER 

1157 

1158 resolver.copy_binary_files(container, from_folder, settings.NUMDAM_DATA_ROOT) 

1159 for article in container.article_set.all(): 

1160 resolver.copy_binary_files(article, from_folder, settings.NUMDAM_DATA_ROOT) 

1161 

1162 elif status == 503: 

1163 raise ServerUnderMaintenance(response.text) 

1164 else: 

1165 raise RuntimeError(response.text) 

1166 

1167 if djvu_exception: 

1168 raise djvu_exception 

1169 

1170 def get(self, request, *args, **kwargs): 

1171 pid = self.kwargs.get("pid", None) 

1172 colid = self.kwargs.get("colid", None) 

1173 site = self.kwargs.get("site", None) 

1174 

1175 try: 

1176 _, status, message = history_views.execute_and_record_func( 

1177 "deploy", pid, colid, self.internal_do, site 

1178 ) 

1179 except Timeout as exception: 

1180 return HttpResponse(exception, status=408) 

1181 except Exception as exception: 

1182 return HttpResponseServerError(exception) 

1183 

1184 data = {"message": message, "status": status} 

1185 return JsonResponse(data) 

1186 

1187 def update_pcj_editor(self, updated_articles): 

1188 for article in updated_articles: 

1189 data = { 

1190 "date_published": article.date_published.strftime("%Y-%m-%d"), 

1191 "article_number": article.article_number, 

1192 } 

1193 url = "http://pcj-editor.u-ga.fr/submit/api-article-publish/" + article.doi + "/" 

1194 requests.post(url, json=data, verify=False) 

1195 

1196 

1197class DeployTranslatedArticleAPIView(CsrfExemptMixin, View): 

1198 article = None 

1199 

1200 def internal_do(self, *args, **kwargs): 

1201 lang = self.kwargs.get("lang", None) 

1202 

1203 translation = None 

1204 for trans_article in self.article.translations.all(): 

1205 if trans_article.lang == lang: 

1206 translation = trans_article 

1207 

1208 if translation is None: 

1209 raise RuntimeError(f"{self.article.doi} does not exist in {lang}") 

1210 

1211 collection = self.article.get_top_collection() 

1212 colid = collection.pid 

1213 container = self.article.my_container 

1214 

1215 if translation.date_published is None: 

1216 # Add date posted 

1217 cmd = ptf_cmds.publishResourcePtfCmd() 

1218 cmd.set_resource(translation) 

1219 updated_articles = cmd.do() 

1220 

1221 # Recompile PDF to add the date posted 

1222 try: 

1223 tex.create_frontpage(colid, container, updated_articles, test=False, lang=lang) 

1224 except Exception: 

1225 raise PDFException( 

1226 "Unable to compile the article PDF. Please contact the centre Mersenne" 

1227 ) 

1228 

1229 # Unlike regular articles, binary files of translations need to be copied before uploading the XML. 

1230 # The full text in HTML is read by the JATS parser, so the HTML file needs to be present on disk 

1231 resolver.copy_binary_files( 

1232 self.article, settings.MERSENNE_TEST_DATA_FOLDER, settings.MERSENNE_PROD_DATA_FOLDER 

1233 ) 

1234 

1235 # Deploy in prod 

1236 xml = ptf_cmds.exportPtfCmd( 

1237 { 

1238 "pid": self.article.pid, 

1239 "with_djvu": False, 

1240 "article_standalone": True, 

1241 "collection_pid": colid, 

1242 "export_to_website": True, 

1243 "export_folder": settings.LOG_DIR, 

1244 } 

1245 ).do() 

1246 xml_file = io.StringIO(xml) 

1247 files = {"xml": xml_file} 

1248 

1249 server_url = getattr(collection, "website")() 

1250 if not server_url: 

1251 raise RuntimeError("The collection has no website") 

1252 url = server_url + reverse("article_in_issue_upload", kwargs={"pid": container.pid}) 

1253 header = {} 

1254 

1255 try: 

1256 response = requests.post( 

1257 url, headers=header, files=files, verify=False 

1258 ) # verify: ignore TLS certificate 

1259 status = response.status_code 

1260 except requests.exceptions.ConnectionError: 

1261 raise ServerUnderMaintenance( 

1262 "The journal is under maintenance. Please try again later." 

1263 ) 

1264 

1265 # Register translation in Crossref 

1266 if 199 < status < 205: 

1267 if self.article.allow_crossref(): 

1268 try: 

1269 recordDOI(translation) 

1270 except Exception: 

1271 raise DOIException( 

1272 "Error while recording the DOI. Please contact the centre Mersenne" 

1273 ) 

1274 

1275 def get(self, request, *args, **kwargs): 

1276 doi = kwargs.get("doi", None) 

1277 self.article = model_helpers.get_article_by_doi(doi) 

1278 if self.article is None: 

1279 raise Http404(f"{doi} does not exist") 

1280 

1281 try: 

1282 _, status, message = history_views.execute_and_record_func( 

1283 "deploy", 

1284 self.article.pid, 

1285 self.article.get_top_collection().pid, 

1286 self.internal_do, 

1287 "website", 

1288 ) 

1289 except Timeout as exception: 

1290 return HttpResponse(exception, status=408) 

1291 except Exception as exception: 

1292 return HttpResponseServerError(exception) 

1293 

1294 data = {"message": message, "status": status} 

1295 return JsonResponse(data) 

1296 

1297 

1298class DeleteJatsIssueAPIView(View): 

1299 # TODO ? rename in DeleteJatsContainerAPIView mais fonctionne tel quel pour book* 

1300 def get(self, request, *args, **kwargs): 

1301 pid = self.kwargs.get("pid", None) 

1302 colid = self.kwargs.get("colid", None) 

1303 site = self.kwargs.get("site", None) 

1304 message = "Le volume a bien été supprimé" 

1305 status = 200 

1306 

1307 issue = model_helpers.get_container(pid) 

1308 if not issue: 

1309 raise Http404(f"{pid} does not exist") 

1310 try: 

1311 mersenneSite = model_helpers.get_site_mersenne(colid) 

1312 

1313 if site == "ptf_tools": 

1314 if issue.is_deployed(mersenneSite): 

1315 issue.undeploy(mersenneSite) 

1316 for article in issue.article_set.all(): 

1317 article.undeploy(mersenneSite) 

1318 

1319 p = model_helpers.get_provider("mathdoc-id") 

1320 

1321 cmd = ptf_cmds.addContainerPtfCmd( 

1322 { 

1323 "pid": issue.pid, 

1324 "ctype": "issue", 

1325 "to_folder": settings.MERSENNE_TEST_DATA_FOLDER, 

1326 } 

1327 ) 

1328 cmd.set_provider(p) 

1329 cmd.add_collection(issue.get_collection()) 

1330 cmd.set_object_to_be_deleted(issue) 

1331 cmd.undo() 

1332 

1333 else: 

1334 if site == "numdam": 

1335 server_url = settings.NUMDAM_PRE_URL 

1336 else: 

1337 collection = issue.get_collection() 

1338 server_url = getattr(collection, site)() 

1339 

1340 if not server_url: 

1341 message = "The collection has no " + site 

1342 status = 500 

1343 else: 

1344 url = server_url + reverse("issue_delete", kwargs={"pid": pid}) 

1345 response = requests.delete(url, verify=False) 

1346 status = response.status_code 

1347 

1348 if status == 404: 

1349 message = "Le serveur retourne un code 404. Vérifier que le volume soit bien sur le serveur" 

1350 elif status > 204: 

1351 body = response.text.encode("utf8") 

1352 message = body[:1000] 

1353 else: 

1354 status = 200 

1355 # unpublish issue in collection site (site_register.json) 

1356 if site == "website": 

1357 if issue.is_deployed(mersenneSite): 

1358 issue.undeploy(mersenneSite) 

1359 for article in issue.article_set.all(): 

1360 article.undeploy(mersenneSite) 

1361 # delete article binary files 

1362 folder = article.get_relative_folder() 

1363 resolver.delete_object_folder( 

1364 folder, 

1365 to_folder=settings.MERSENNE_PROD_DATA_FORLDER, 

1366 ) 

1367 # delete issue binary files 

1368 folder = issue.get_relative_folder() 

1369 resolver.delete_object_folder( 

1370 folder, to_folder=settings.MERSENNE_PROD_DATA_FORLDER 

1371 ) 

1372 

1373 except Timeout as exception: 

1374 return HttpResponse(exception, status=408) 

1375 except Exception as exception: 

1376 return HttpResponseServerError(exception) 

1377 

1378 data = {"message": message, "status": status} 

1379 return JsonResponse(data) 

1380 

1381 

1382class ArchiveIssueAPIView(View): 

1383 def get(self, request, *args, **kwargs): 

1384 try: 

1385 pid = kwargs["pid"] 

1386 colid = kwargs["colid"] 

1387 except IndexError: 

1388 raise Http404 

1389 

1390 try: 

1391 cmd = ptf_cmds.archiveIssuePtfCmd( 

1392 { 

1393 "pid": pid, 

1394 "export_folder": settings.MATHDOC_ARCHIVE_FOLDER, 

1395 "binary_files_folder": settings.MERSENNE_PROD_DATA_FOLDER, 

1396 "needs_publication_date": True, 

1397 } 

1398 ) 

1399 result_, status, message = history_views.execute_and_record_func( 

1400 "archive", pid, colid, cmd.do 

1401 ) 

1402 except Exception as exception: 

1403 return HttpResponseServerError(exception) 

1404 

1405 data = {"message": message, "status": 200} 

1406 return JsonResponse(data) 

1407 

1408 

1409class CreateDjvuAPIView(View): 

1410 def internal_do(self, *args, **kwargs): 

1411 pid = self.kwargs.get("pid", None) 

1412 

1413 resource = model_helpers.get_resource(pid) 

1414 cmd = ptf_cmds.addDjvuPtfCmd() 

1415 cmd.set_resource(resource) 

1416 cmd.do() 

1417 

1418 def get(self, request, *args, **kwargs): 

1419 pid = self.kwargs.get("pid", None) 

1420 colid = pid.split("_")[0] 

1421 

1422 try: 

1423 _, status, message = history_views.execute_and_record_func( 

1424 "numdam", pid, colid, self.internal_do 

1425 ) 

1426 except Exception as exception: 

1427 return HttpResponseServerError(exception) 

1428 

1429 data = {"message": message, "status": status} 

1430 return JsonResponse(data) 

1431 

1432 

1433class PTFToolsHomeView(LoginRequiredMixin, View): 

1434 """ 

1435 Home Page. 

1436 - Admin & staff -> Render blank home.html 

1437 - User with unique authorized collection -> Redirect to collection details page 

1438 - User with multiple authorized collections -> Render home.html with data 

1439 - Comment moderator -> Comments dashboard 

1440 - Others -> 404 response 

1441 """ 

1442 

1443 def get(self, request, *args, **kwargs) -> HttpResponse: 

1444 # Staff or user with authorized collections 

1445 if request.user.is_staff or request.user.is_superuser: 

1446 return render(request, "home.html") 

1447 

1448 colids = get_authorized_collections(request.user) 

1449 is_mod = is_comment_moderator(request.user) 

1450 

1451 # The user has no rights 

1452 if not (colids or is_mod): 

1453 raise Http404("No collections associated with your account.") 

1454 # Comment moderator only 

1455 elif not colids: 

1456 return HttpResponseRedirect(reverse("comment_list")) 

1457 

1458 # User with unique collection -> Redirect to collection detail page 

1459 if len(colids) == 1 or getattr(settings, "COMMENTS_DISABLED", False): 

1460 return HttpResponseRedirect(reverse("collection-detail", kwargs={"pid": colids[0]})) 

1461 

1462 # User with multiple authorized collections - Special home 

1463 context = {} 

1464 context["overview"] = True 

1465 

1466 all_collections = Collection.objects.filter(pid__in=colids).values("pid", "title_html") 

1467 all_collections = {c["pid"]: c for c in all_collections} 

1468 

1469 # Comments summary 

1470 try: 

1471 error, comments_data = get_comments_for_home(request.user) 

1472 except AttributeError: 

1473 error, comments_data = True, {} 

1474 

1475 context["comment_server_ok"] = False 

1476 

1477 if not error: 

1478 context["comment_server_ok"] = True 

1479 if comments_data: 

1480 for col_id, comment_nb in comments_data.items(): 

1481 if col_id.upper() in all_collections: 1481 ↛ 1480line 1481 didn't jump to line 1480 because the condition on line 1481 was always true

1482 all_collections[col_id.upper()]["pending_comments"] = comment_nb 

1483 

1484 # TODO: Translations summary 

1485 context["translation_server_ok"] = False 

1486 

1487 # Sort the collections according to the number of pending comments 

1488 context["collections"] = sorted( 

1489 all_collections.values(), key=lambda col: col.get("pending_comments", -1), reverse=True 

1490 ) 

1491 

1492 return render(request, "home.html", context) 

1493 

1494 

1495class BaseMersenneDashboardView(TemplateView, history_views.HistoryContextMixin): 

1496 columns = 5 

1497 

1498 def get_common_context_data(self, **kwargs): 

1499 context = super().get_context_data(**kwargs) 

1500 now = timezone.now() 

1501 curyear = now.year 

1502 years = range(curyear - self.columns + 1, curyear + 1) 

1503 

1504 context["collections"] = settings.MERSENNE_COLLECTIONS 

1505 context["containers_to_be_published"] = [] 

1506 context["last_col_events"] = [] 

1507 

1508 event = get_history_last_event_by("clockss", "ALL") 

1509 clockss_gap = get_gap(now, event) 

1510 

1511 context["years"] = years 

1512 context["clockss_gap"] = clockss_gap 

1513 

1514 return context 

1515 

1516 def calculate_articles_and_pages(self, pid, years): 

1517 data_by_year = [] 

1518 total_articles = [0] * len(years) 

1519 total_pages = [0] * len(years) 

1520 

1521 for year in years: 

1522 articles = self.get_articles_for_year(pid, year) 

1523 articles_count = articles.count() 

1524 page_count = sum(article.get_article_page_count() for article in articles) 

1525 

1526 data_by_year.append({"year": year, "articles": articles_count, "pages": page_count}) 

1527 total_articles[year - years[0]] += articles_count 

1528 total_pages[year - years[0]] += page_count 

1529 

1530 return data_by_year, total_articles, total_pages 

1531 

1532 def get_articles_for_year(self, pid, year): 

1533 return Article.objects.filter( 

1534 Q(my_container__my_collection__pid=pid) 

1535 & ( 

1536 Q(date_published__year=year, date_online_first__isnull=True) 

1537 | Q(date_online_first__year=year) 

1538 ) 

1539 ).prefetch_related("resourcecount_set") 

1540 

1541 

1542class PublishedArticlesDashboardView(BaseMersenneDashboardView): 

1543 template_name = "dashboard/published_articles.html" 

1544 

1545 def get_context_data(self, **kwargs): 

1546 context = self.get_common_context_data(**kwargs) 

1547 years = context["years"] 

1548 

1549 published_articles = [] 

1550 total_published_articles = [ 

1551 {"year": year, "total_articles": 0, "total_pages": 0} for year in years 

1552 ] 

1553 

1554 for pid in settings.MERSENNE_COLLECTIONS: 

1555 if pid != "MERSENNE": 

1556 articles_data, total_articles, total_pages = self.calculate_articles_and_pages( 

1557 pid, years 

1558 ) 

1559 published_articles.append({"pid": pid, "years": articles_data}) 

1560 

1561 for i, year in enumerate(years): 

1562 total_published_articles[i]["total_articles"] += total_articles[i] 

1563 total_published_articles[i]["total_pages"] += total_pages[i] 

1564 

1565 context["published_articles"] = published_articles 

1566 context["total_published_articles"] = total_published_articles 

1567 

1568 return context 

1569 

1570 

1571class CreatedVolumesDashboardView(BaseMersenneDashboardView): 

1572 template_name = "dashboard/created_volumes.html" 

1573 

1574 def get_context_data(self, **kwargs): 

1575 context = self.get_common_context_data(**kwargs) 

1576 years = context["years"] 

1577 

1578 created_volumes = [] 

1579 total_created_volumes = [ 

1580 {"year": year, "total_articles": 0, "total_pages": 0} for year in years 

1581 ] 

1582 

1583 for pid in settings.MERSENNE_COLLECTIONS: 

1584 if pid != "MERSENNE": 

1585 volumes_data, total_articles, total_pages = self.calculate_volumes_and_pages( 

1586 pid, years 

1587 ) 

1588 created_volumes.append({"pid": pid, "years": volumes_data}) 

1589 

1590 for i, year in enumerate(years): 

1591 total_created_volumes[i]["total_articles"] += total_articles[i] 

1592 total_created_volumes[i]["total_pages"] += total_pages[i] 

1593 

1594 context["created_volumes"] = created_volumes 

1595 context["total_created_volumes"] = total_created_volumes 

1596 

1597 return context 

1598 

1599 def calculate_volumes_and_pages(self, pid, years): 

1600 data_by_year = [] 

1601 total_articles = [0] * len(years) 

1602 total_pages = [0] * len(years) 

1603 

1604 for year in years: 

1605 issues = Container.objects.filter(my_collection__pid=pid, year=year) 

1606 articles_count = 0 

1607 page_count = 0 

1608 

1609 for issue in issues: 

1610 articles = issue.article_set.filter( 

1611 Q(date_published__isnull=False) | Q(date_online_first__isnull=False) 

1612 ).prefetch_related("resourcecount_set") 

1613 

1614 articles_count += articles.count() 

1615 page_count += sum(article.get_article_page_count() for article in articles) 

1616 

1617 data_by_year.append({"year": year, "articles": articles_count, "pages": page_count}) 

1618 total_articles[year - years[0]] += articles_count 

1619 total_pages[year - years[0]] += page_count 

1620 

1621 return data_by_year, total_articles, total_pages 

1622 

1623 

1624class ReferencingChoice(View): 

1625 def post(self, request, *args, **kwargs): 

1626 if request.POST.get("optSite") == "ads": 

1627 return redirect( 

1628 reverse("referencingAds", kwargs={"colid": request.POST.get("selectCol")}) 

1629 ) 

1630 elif request.POST.get("optSite") == "wos": 

1631 comp = ReferencingCheckerWos() 

1632 journal = comp.make_journal(request.POST.get("selectCol")) 

1633 if journal is None: 

1634 return render( 

1635 request, 

1636 "dashboard/referencing.html", 

1637 { 

1638 "error": "Collection not found", 

1639 "colid": request.POST.get("selectCol"), 

1640 "optSite": request.POST.get("optSite"), 

1641 }, 

1642 ) 

1643 return render( 

1644 request, 

1645 "dashboard/referencing.html", 

1646 { 

1647 "journal": journal, 

1648 "colid": request.POST.get("selectCol"), 

1649 "optSite": request.POST.get("optSite"), 

1650 }, 

1651 ) 

1652 

1653 

1654class ReferencingWosFileView(View): 

1655 template_name = "dashboard/referencing.html" 

1656 

1657 def post(self, request, *args, **kwargs): 

1658 colid = request.POST["colid"] 

1659 if request.FILES.get("risfile") is None: 

1660 message = "No file uploaded" 

1661 return render( 

1662 request, self.template_name, {"message": message, "colid": colid, "optSite": "wos"} 

1663 ) 

1664 uploaded_file = request.FILES["risfile"] 

1665 comp = ReferencingCheckerWos() 

1666 journal = comp.check_references(colid, uploaded_file) 

1667 return render(request, self.template_name, {"journal": journal}) 

1668 

1669 

1670class ReferencingDashboardView(BaseMersenneDashboardView): 

1671 template_name = "dashboard/referencing.html" 

1672 

1673 def get(self, request, *args, **kwargs): 

1674 colid = self.kwargs.get("colid", None) 

1675 comp = ReferencingCheckerAds() 

1676 journal = comp.check_references(colid) 

1677 return render(request, self.template_name, {"journal": journal}) 

1678 

1679 

1680class BaseCollectionView(TemplateView): 

1681 def get_context_data(self, **kwargs): 

1682 context = super().get_context_data(**kwargs) 

1683 aid = context.get("aid") 

1684 year = context.get("year") 

1685 

1686 if aid and year: 

1687 context["collection"] = self.get_collection(aid, year) 

1688 

1689 return context 

1690 

1691 def get_collection(self, aid, year): 

1692 """Method to be overridden by subclasses to fetch the appropriate collection""" 

1693 raise NotImplementedError("Subclasses must implement get_collection method") 

1694 

1695 

1696class ArticleListView(BaseCollectionView): 

1697 template_name = "collection-list.html" 

1698 

1699 def get_collection(self, aid, year): 

1700 return Article.objects.filter( 

1701 Q(my_container__my_collection__pid=aid) 

1702 & ( 

1703 Q(date_published__year=year, date_online_first__isnull=True) 

1704 | Q(date_online_first__year=year) 

1705 ) 

1706 ).prefetch_related("resourcecount_set") 

1707 

1708 

1709class VolumeListView(BaseCollectionView): 

1710 template_name = "collection-list.html" 

1711 

1712 def get_collection(self, aid, year): 

1713 return Article.objects.filter( 

1714 Q(my_container__my_collection__pid=aid, my_container__year=year) 

1715 & (Q(date_published__isnull=False) | Q(date_online_first__isnull=False)) 

1716 ).prefetch_related("resourcecount_set") 

1717 

1718 

1719class DOAJResourceRegisterView(View): 

1720 def get(self, request, *args, **kwargs): 

1721 pid = kwargs.get("pid", None) 

1722 resource = model_helpers.get_resource(pid) 

1723 if resource is None: 

1724 raise Http404 

1725 if resource.container.pid == settings.ISSUE_PENDING_PUBLICATION_PIDS.get( 

1726 resource.colid, None 

1727 ): 

1728 raise RuntimeError("Pending publications should not be deployed") 

1729 

1730 try: 

1731 data = {} 

1732 doaj_meta, response = doaj_pid_register(pid) 

1733 if response is None: 

1734 return HttpResponse(status=204) 

1735 elif doaj_meta and 200 <= response.status_code <= 299: 

1736 data.update(doaj_meta) 

1737 else: 

1738 return HttpResponse(status=response.status_code, reason=response.text) 

1739 except Timeout as exception: 

1740 return HttpResponse(exception, status=408) 

1741 except Exception as exception: 

1742 return HttpResponseServerError(exception) 

1743 return JsonResponse(data) 

1744 

1745 

1746class CROSSREFResourceRegisterView(View): 

1747 def get(self, request, *args, **kwargs): 

1748 pid = kwargs.get("pid", None) 

1749 # option force for registering doi of articles without date_published (ex; TSG from Numdam) 

1750 force = kwargs.get("force", None) 

1751 if not request.user.is_superuser: 

1752 force = None 

1753 

1754 resource = model_helpers.get_resource(pid) 

1755 if resource is None: 

1756 raise Http404 

1757 

1758 resource = resource.cast() 

1759 meth = getattr(self, "recordDOI" + resource.classname) 

1760 try: 

1761 data = meth(resource, force) 

1762 except Timeout as exception: 

1763 return HttpResponse(exception, status=408) 

1764 except Exception as exception: 

1765 return HttpResponseServerError(exception) 

1766 return JsonResponse(data) 

1767 

1768 def recordDOIArticle(self, article, force=None): 

1769 result = {"status": 404} 

1770 if ( 

1771 article.doi 

1772 and not article.do_not_publish 

1773 and (article.date_published or article.date_online_first or force == "force") 

1774 ): 

1775 if article.my_container.year is None: # or article.my_container.year == '0': 

1776 article.my_container.year = datetime.now().strftime("%Y") 

1777 result = recordDOI(article) 

1778 return result 

1779 

1780 def recordDOICollection(self, collection, force=None): 

1781 return recordDOI(collection) 

1782 

1783 def recordDOIContainer(self, container, force=None): 

1784 data = {"status": 200, "message": "tout va bien"} 

1785 

1786 if container.ctype == "issue": 

1787 if container.doi: 

1788 result = recordDOI(container) 

1789 if result["status"] != 200: 

1790 return result 

1791 if force == "force": 

1792 articles = container.article_set.exclude( 

1793 doi__isnull=True, do_not_publish=True, date_online_first__isnull=True 

1794 ) 

1795 else: 

1796 articles = container.article_set.exclude( 

1797 doi__isnull=True, 

1798 do_not_publish=True, 

1799 date_published__isnull=True, 

1800 date_online_first__isnull=True, 

1801 ) 

1802 

1803 for article in articles: 

1804 result = self.recordDOIArticle(article, force) 

1805 if result["status"] != 200: 

1806 data = result 

1807 else: 

1808 return recordDOI(container) 

1809 return data 

1810 

1811 

1812class CROSSREFResourceCheckStatusView(View): 

1813 def get(self, request, *args, **kwargs): 

1814 pid = kwargs.get("pid", None) 

1815 resource = model_helpers.get_resource(pid) 

1816 if resource is None: 

1817 raise Http404 

1818 resource = resource.cast() 

1819 meth = getattr(self, "checkDOI" + resource.classname) 

1820 try: 

1821 meth(resource) 

1822 except Timeout as exception: 

1823 return HttpResponse(exception, status=408) 

1824 except Exception as exception: 

1825 return HttpResponseServerError(exception) 

1826 

1827 data = {"status": 200, "message": "tout va bien"} 

1828 return JsonResponse(data) 

1829 

1830 def checkDOIArticle(self, article): 

1831 if article.my_container.year is None or article.my_container.year == "0": 

1832 article.my_container.year = datetime.now().strftime("%Y") 

1833 checkDOI(article) 

1834 

1835 def checkDOICollection(self, collection): 

1836 checkDOI(collection) 

1837 

1838 def checkDOIContainer(self, container): 

1839 if container.doi is not None: 

1840 checkDOI(container) 

1841 for article in container.article_set.all(): 

1842 self.checkDOIArticle(article) 

1843 

1844 

1845class CROSSREFResourcePendingPublicationRegisterView(View): 

1846 def get(self, request, *args, **kwargs): 

1847 pid = kwargs.get("pid", None) 

1848 # option force for registering doi of articles without date_published (ex; TSG from Numdam) 

1849 

1850 resource = model_helpers.get_resource(pid) 

1851 if resource is None: 

1852 raise Http404 

1853 

1854 resource = resource.cast() 

1855 meth = getattr(self, "recordPendingPublication" + resource.classname) 

1856 try: 

1857 data = meth(resource) 

1858 except Timeout as exception: 

1859 return HttpResponse(exception, status=408) 

1860 except Exception as exception: 

1861 return HttpResponseServerError(exception) 

1862 return JsonResponse(data) 

1863 

1864 def recordPendingPublicationArticle(self, article): 

1865 result = {"status": 404} 

1866 if article.doi and not article.date_published and not article.date_online_first: 

1867 if article.my_container.year is None: # or article.my_container.year == '0': 

1868 article.my_container.year = datetime.now().strftime("%Y") 

1869 result = recordPendingPublication(article) 

1870 return result 

1871 

1872 

1873class RegisterPubmedFormView(FormView): 

1874 template_name = "record_pubmed_dialog.html" 

1875 form_class = RegisterPubmedForm 

1876 

1877 def get_context_data(self, **kwargs): 

1878 context = super().get_context_data(**kwargs) 

1879 context["pid"] = self.kwargs["pid"] 

1880 context["helper"] = PtfLargeModalFormHelper 

1881 return context 

1882 

1883 

1884class RegisterPubmedView(View): 

1885 def get(self, request, *args, **kwargs): 

1886 pid = kwargs.get("pid", None) 

1887 update_article = self.request.GET.get("update_article", "on") == "on" 

1888 

1889 article = model_helpers.get_article(pid) 

1890 if article is None: 

1891 raise Http404 

1892 try: 

1893 recordPubmed(article, update_article) 

1894 except Exception as exception: 

1895 messages.error("Unable to register the article in PubMed") 

1896 return HttpResponseServerError(exception) 

1897 

1898 return HttpResponseRedirect( 

1899 reverse("issue-items", kwargs={"pid": article.my_container.pid}) 

1900 ) 

1901 

1902 

1903class PTFToolsContainerView(TemplateView): 

1904 template_name = "" 

1905 

1906 def get_context_data(self, **kwargs): 

1907 context = super().get_context_data(**kwargs) 

1908 

1909 container = model_helpers.get_container(self.kwargs.get("pid")) 

1910 if container is None: 

1911 raise Http404 

1912 citing_articles = container.citations() 

1913 source = self.request.GET.get("source", None) 

1914 if container.ctype.startswith("book"): 

1915 book_parts = ( 

1916 container.article_set.filter(sites__id=settings.SITE_ID).all().order_by("seq") 

1917 ) 

1918 references = False 

1919 if container.ctype == "book-monograph": 

1920 # on regarde si il y a au moins une bibliographie 

1921 for art in container.article_set.all(): 

1922 if art.bibitem_set.count() > 0: 

1923 references = True 

1924 context.update( 

1925 { 

1926 "book": container, 

1927 "book_parts": list(book_parts), 

1928 "source": source, 

1929 "citing_articles": citing_articles, 

1930 "references": references, 

1931 "test_website": container.get_top_collection() 

1932 .extlink_set.get(rel="test_website") 

1933 .location, 

1934 "prod_website": container.get_top_collection() 

1935 .extlink_set.get(rel="website") 

1936 .location, 

1937 } 

1938 ) 

1939 self.template_name = "book-toc.html" 

1940 else: 

1941 articles = container.article_set.all().order_by("seq") 

1942 for article in articles: 

1943 try: 

1944 last_match = ( 

1945 history_models.HistoryEvent.objects.filter( 

1946 pid=article.pid, 

1947 type="matching", 

1948 ) 

1949 .only("created_on") 

1950 .latest("created_on") 

1951 ) 

1952 except history_models.HistoryEvent.DoesNotExist as _: 

1953 article.last_match = None 

1954 else: 

1955 article.last_match = last_match.created_on 

1956 

1957 # article1 = articles.first() 

1958 # date = article1.deployed_date() 

1959 # TODO next_issue, previous_issue 

1960 

1961 # check DOI est maintenant une commande à part 

1962 # # specific PTFTools : on regarde pour chaque article l'état de l'enregistrement DOI 

1963 # articlesWithStatus = [] 

1964 # for article in articles: 

1965 # checkDOIExistence(article) 

1966 # articlesWithStatus.append(article) 

1967 

1968 test_location = prod_location = "" 

1969 qs = container.get_top_collection().extlink_set.filter(rel="test_website") 

1970 if qs: 

1971 test_location = qs.first().location 

1972 qs = container.get_top_collection().extlink_set.filter(rel="website") 

1973 if qs: 

1974 prod_location = qs.first().location 

1975 context.update( 

1976 { 

1977 "issue": container, 

1978 "articles": articles, 

1979 "source": source, 

1980 "citing_articles": citing_articles, 

1981 "test_website": test_location, 

1982 "prod_website": prod_location, 

1983 } 

1984 ) 

1985 

1986 if container.pid in settings.ISSUE_PENDING_PUBLICATION_PIDS.values(): 

1987 context["is_issue_pending_publication"] = True 

1988 self.template_name = "issue-items.html" 

1989 

1990 context["allow_crossref"] = container.allow_crossref() 

1991 context["coltype"] = container.my_collection.coltype 

1992 return context 

1993 

1994 

1995class ExtLinkInline(InlineFormSetFactory): 

1996 model = ExtLink 

1997 form_class = ExtLinkForm 

1998 factory_kwargs = {"extra": 0} 

1999 

2000 

2001class ResourceIdInline(InlineFormSetFactory): 

2002 model = ResourceId 

2003 form_class = ResourceIdForm 

2004 factory_kwargs = {"extra": 0} 

2005 

2006 

2007class IssueDetailAPIView(View): 

2008 def get(self, request, *args, **kwargs): 

2009 issue = get_object_or_404(Container, pid=kwargs["pid"]) 

2010 deployed_date = issue.deployed_date() 

2011 result = { 

2012 "deployed_date": timezone.localtime(deployed_date).strftime("%Y-%m-%d %H:%M") 

2013 if deployed_date 

2014 else None, 

2015 "last_modified": timezone.localtime(issue.last_modified).strftime("%Y-%m-%d %H:%M"), 

2016 "all_doi_are_registered": issue.all_doi_are_registered(), 

2017 "registered_in_doaj": issue.registered_in_doaj(), 

2018 "doi": issue.my_collection.doi, 

2019 "has_articles_excluded_from_publication": issue.has_articles_excluded_from_publication(), 

2020 } 

2021 try: 

2022 latest = get_last_unsolved_error(pid=issue.pid, strict=False) 

2023 except history_models.HistoryEvent.DoesNotExist as _: 

2024 pass 

2025 else: 

2026 result["latest"] = latest.message 

2027 result["latest_date"] = timezone.localtime(latest.created_on).strftime( 

2028 "%Y-%m-%d %H:%M" 

2029 ) 

2030 

2031 result["latest_type"] = latest.type.capitalize() 

2032 for event_type in ["matching", "edit", "deploy", "archive", "import"]: 

2033 try: 

2034 result[event_type] = timezone.localtime( 

2035 history_models.HistoryEvent.objects.filter( 

2036 type=event_type, 

2037 status="OK", 

2038 pid__startswith=issue.pid, 

2039 ) 

2040 .latest("created_on") 

2041 .created_on 

2042 ).strftime("%Y-%m-%d %H:%M") 

2043 except history_models.HistoryEvent.DoesNotExist as _: 

2044 result[event_type] = "" 

2045 return JsonResponse(result) 

2046 

2047 

2048class CollectionFormView(LoginRequiredMixin, StaffuserRequiredMixin, NamedFormsetsMixin, View): 

2049 model = Collection 

2050 form_class = CollectionForm 

2051 inlines = [ResourceIdInline, ExtLinkInline] 

2052 inlines_names = ["resource_ids_form", "ext_links_form"] 

2053 

2054 def get_context_data(self, **kwargs): 

2055 context = super().get_context_data(**kwargs) 

2056 context["helper"] = PtfFormHelper 

2057 context["formset_helper"] = FormSetHelper 

2058 return context 

2059 

2060 def add_description(self, collection, description, lang, seq): 

2061 if description: 

2062 la = Abstract( 

2063 resource=collection, 

2064 tag="description", 

2065 lang=lang, 

2066 seq=seq, 

2067 value_xml=f'<description xml:lang="{lang}">{replace_html_entities(description)}</description>', 

2068 value_html=description, 

2069 value_tex=description, 

2070 ) 

2071 la.save() 

2072 

2073 def form_valid(self, form): 

2074 if form.instance.abbrev: 

2075 form.instance.title_xml = f"<title-group><title>{form.instance.title_tex}</title><abbrev-title>{form.instance.abbrev}</abbrev-title></title-group>" 

2076 else: 

2077 form.instance.title_xml = ( 

2078 f"<title-group><title>{form.instance.title_tex}</title></title-group>" 

2079 ) 

2080 

2081 form.instance.title_html = form.instance.title_tex 

2082 form.instance.title_sort = form.instance.title_tex 

2083 result = super().form_valid(form) 

2084 

2085 collection = self.object 

2086 collection.abstract_set.all().delete() 

2087 

2088 seq = 1 

2089 description = form.cleaned_data["description_en"] 

2090 if description: 

2091 self.add_description(collection, description, "en", seq) 

2092 seq += 1 

2093 description = form.cleaned_data["description_fr"] 

2094 if description: 

2095 self.add_description(collection, description, "fr", seq) 

2096 

2097 return result 

2098 

2099 def get_success_url(self): 

2100 messages.success(self.request, "La Collection a été modifiée avec succès") 

2101 return reverse("collection-detail", kwargs={"pid": self.object.pid}) 

2102 

2103 

2104class CollectionCreate(CollectionFormView, CreateWithInlinesView): 

2105 """ 

2106 Warning : Not yet finished 

2107 Automatic site membership creation is still missing 

2108 """ 

2109 

2110 

2111class CollectionUpdate(CollectionFormView, UpdateWithInlinesView): 

2112 slug_field = "pid" 

2113 slug_url_kwarg = "pid" 

2114 

2115 

2116def suggest_load_journal_dois(colid): 

2117 articles = ( 

2118 Article.objects.filter(my_container__my_collection__pid=colid) 

2119 .filter(doi__isnull=False) 

2120 .filter(Q(date_published__isnull=False) | Q(date_online_first__isnull=False)) 

2121 .values_list("doi", flat=True) 

2122 ) 

2123 

2124 try: 

2125 articles = sorted( 

2126 articles, 

2127 key=lambda d: ( 

2128 re.search(r"([a-zA-Z]+).\d+$", d).group(1), 

2129 int(re.search(r".(\d+)$", d).group(1)), 

2130 ), 

2131 ) 

2132 except: # noqa: E722 (we'll look later) 

2133 pass 

2134 return [f'<option value="{doi}">' for doi in articles] 

2135 

2136 

2137def get_context_with_volumes(journal): 

2138 result = model_helpers.get_volumes_in_collection(journal) 

2139 volume_count = result["volume_count"] 

2140 collections = [] 

2141 for ancestor in journal.ancestors.all(): 

2142 item = model_helpers.get_volumes_in_collection(ancestor) 

2143 volume_count = max(0, volume_count) 

2144 item.update({"journal": ancestor}) 

2145 collections.append(item) 

2146 

2147 # add the parent collection to its children list and sort it by date 

2148 result.update({"journal": journal}) 

2149 collections.append(result) 

2150 

2151 collections = [c for c in collections if c["sorted_issues"]] 

2152 collections.sort( 

2153 key=lambda ancestor: ancestor["sorted_issues"][0]["volumes"][0]["lyear"], 

2154 reverse=True, 

2155 ) 

2156 

2157 context = { 

2158 "journal": journal, 

2159 "sorted_issues": result["sorted_issues"], 

2160 "volume_count": volume_count, 

2161 "max_width": result["max_width"], 

2162 "collections": collections, 

2163 "choices": "\n".join(suggest_load_journal_dois(journal.pid)), 

2164 } 

2165 return context 

2166 

2167 

2168class CollectionDetail( 

2169 UserPassesTestMixin, SingleObjectMixin, ListView, history_views.HistoryContextMixin 

2170): 

2171 model = Collection 

2172 slug_field = "pid" 

2173 slug_url_kwarg = "pid" 

2174 template_name = "ptf/collection_detail.html" 

2175 

2176 def test_func(self): 

2177 return is_authorized_editor(self.request.user, self.kwargs.get("pid")) 

2178 

2179 def get(self, request, *args, **kwargs): 

2180 self.object = self.get_object(queryset=Collection.objects.all()) 

2181 return super().get(request, *args, **kwargs) 

2182 

2183 def get_context_data(self, **kwargs): 

2184 context = super().get_context_data(**kwargs) 

2185 context["object_list"] = context["object_list"].filter( 

2186 Q(ctype="issue") | Q(ctype="book-lecture-notes") 

2187 ) 

2188 context["special_issues_user"] = self.object.pid in settings.SPECIAL_ISSUES_USERS 

2189 context.update(get_context_with_volumes(self.object)) 

2190 

2191 if self.object.pid in settings.ISSUE_TO_APPEAR_PIDS: 

2192 context["issue_to_appear_pid"] = settings.ISSUE_TO_APPEAR_PIDS[self.object.pid] 

2193 context["issue_to_appear"] = Container.objects.filter( 

2194 pid=context["issue_to_appear_pid"] 

2195 ).exists() 

2196 try: 

2197 latest_error = history_models.HistoryEvent.objects.filter( 

2198 status="ERROR", col=self.object 

2199 ).latest("created_on") 

2200 except history_models.HistoryEvent.DoesNotExist as _: 

2201 pass 

2202 else: 

2203 message = latest_error.message 

2204 if message: 

2205 i = message.find(" - ") 

2206 latest_exception = message[:i] 

2207 latest_error_message = message[i + 3 :] 

2208 context["latest_exception"] = latest_exception 

2209 context["latest_exception_date"] = latest_error.created_on 

2210 context["latest_exception_type"] = latest_error.type 

2211 context["latest_error_message"] = latest_error_message 

2212 

2213 archive_in_error = history_models.HistoryEvent.objects.filter( 

2214 status="ERROR", col=self.object, type="archive" 

2215 ).exists() 

2216 

2217 context["archive_in_error"] = archive_in_error 

2218 

2219 return context 

2220 

2221 def get_queryset(self): 

2222 query = self.object.content.all() 

2223 

2224 for ancestor in self.object.ancestors.all(): 

2225 query |= ancestor.content.all() 

2226 

2227 return query.order_by("-year", "-vseries", "-volume", "-volume_int", "-number_int") 

2228 

2229 

2230class ContainerEditView(FormView): 

2231 template_name = "container_form.html" 

2232 form_class = ContainerForm 

2233 

2234 def get_success_url(self): 

2235 if self.kwargs["pid"]: 

2236 return reverse("issue-items", kwargs={"pid": self.kwargs["pid"]}) 

2237 return reverse("mersenne_dashboard/published_articles") 

2238 

2239 def set_success_message(self): # pylint: disable=no-self-use 

2240 messages.success(self.request, "Le fascicule a été modifié") 

2241 

2242 def get_form_kwargs(self): 

2243 kwargs = super().get_form_kwargs() 

2244 if "pid" not in self.kwargs: 

2245 self.kwargs["pid"] = None 

2246 if "colid" not in self.kwargs: 

2247 self.kwargs["colid"] = None 

2248 if "data" in kwargs and "colid" in kwargs["data"]: 

2249 # colid is passed as a hidden param in the form. 

2250 # It is used when you submit a new container 

2251 self.kwargs["colid"] = kwargs["data"]["colid"] 

2252 

2253 self.kwargs["container"] = kwargs["container"] = model_helpers.get_container( 

2254 self.kwargs["pid"] 

2255 ) 

2256 return kwargs 

2257 

2258 def get_context_data(self, **kwargs): 

2259 context = super().get_context_data(**kwargs) 

2260 

2261 context["pid"] = self.kwargs["pid"] 

2262 context["colid"] = self.kwargs["colid"] 

2263 context["container"] = self.kwargs["container"] 

2264 

2265 context["edit_container"] = context["pid"] is not None 

2266 context["name"] = resolve(self.request.path_info).url_name 

2267 

2268 return context 

2269 

2270 def form_valid(self, form): 

2271 new_pid = form.cleaned_data.get("pid") 

2272 new_title = form.cleaned_data.get("title") 

2273 new_trans_title = form.cleaned_data.get("trans_title") 

2274 new_publisher = form.cleaned_data.get("publisher") 

2275 new_year = form.cleaned_data.get("year") 

2276 new_volume = form.cleaned_data.get("volume") 

2277 new_number = form.cleaned_data.get("number") 

2278 

2279 collection = None 

2280 issue = self.kwargs["container"] 

2281 if issue is not None: 

2282 collection = issue.my_collection 

2283 elif self.kwargs["colid"] is not None: 

2284 if "CR" in self.kwargs["colid"]: 

2285 collection = model_helpers.get_collection(self.kwargs["colid"], sites=False) 

2286 else: 

2287 collection = model_helpers.get_collection(self.kwargs["colid"]) 

2288 

2289 if collection is None: 

2290 raise ValueError("Collection for " + new_pid + " does not exist") 

2291 

2292 # Icon 

2293 new_icon_location = "" 

2294 if "icon" in self.request.FILES: 

2295 filename = os.path.basename(self.request.FILES["icon"].name) 

2296 file_extension = filename.split(".")[1] 

2297 

2298 icon_filename = resolver.get_disk_location( 

2299 settings.MERSENNE_TEST_DATA_FOLDER, 

2300 collection.pid, 

2301 file_extension, 

2302 new_pid, 

2303 None, 

2304 True, 

2305 ) 

2306 

2307 with open(icon_filename, "wb+") as destination: 

2308 for chunk in self.request.FILES["icon"].chunks(): 

2309 destination.write(chunk) 

2310 

2311 folder = resolver.get_relative_folder(collection.pid, new_pid) 

2312 new_icon_location = os.path.join(folder, new_pid + "." + file_extension) 

2313 name = resolve(self.request.path_info).url_name 

2314 if name == "special_issue_create": 

2315 self.kwargs["name"] = name 

2316 if self.kwargs["container"]: 

2317 # Edit Issue 

2318 issue = self.kwargs["container"] 

2319 if issue is None: 

2320 raise ValueError(self.kwargs["pid"] + " does not exist") 

2321 

2322 issue.pid = new_pid 

2323 issue.title_tex = issue.title_html = new_title 

2324 issue.title_xml = build_title_xml( 

2325 title=new_title, 

2326 lang=issue.lang, 

2327 title_type="issue-title", 

2328 ) 

2329 

2330 trans_lang = "" 

2331 if issue.trans_lang != "" and issue.trans_lang != "und": 

2332 trans_lang = issue.trans_lang 

2333 elif new_trans_title != "": 

2334 trans_lang = "fr" if issue.lang == "en" else "en" 

2335 issue.trans_lang = trans_lang 

2336 

2337 if trans_lang != "" and new_trans_title != "": 

2338 issue.trans_title_html = "" 

2339 issue.trans_title_tex = "" 

2340 title_xml = build_title_xml( 

2341 title=new_trans_title, lang=trans_lang, title_type="issue-title" 

2342 ) 

2343 try: 

2344 trans_title_object = Title.objects.get(resource=issue, lang=trans_lang) 

2345 trans_title_object.title_html = new_trans_title 

2346 trans_title_object.title_xml = title_xml 

2347 trans_title_object.save() 

2348 except Title.DoesNotExist: 

2349 trans_title = Title( 

2350 resource=issue, 

2351 lang=trans_lang, 

2352 type="main", 

2353 title_html=new_trans_title, 

2354 title_xml=title_xml, 

2355 ) 

2356 trans_title.save() 

2357 issue.year = new_year 

2358 issue.volume = new_volume 

2359 issue.volume_int = make_int(new_volume) 

2360 issue.number = new_number 

2361 issue.number_int = make_int(new_number) 

2362 issue.save() 

2363 else: 

2364 xissue = create_issuedata() 

2365 

2366 xissue.ctype = "issue" 

2367 xissue.pid = new_pid 

2368 xissue.lang = "en" 

2369 xissue.title_tex = new_title 

2370 xissue.title_html = new_title 

2371 xissue.title_xml = build_title_xml( 

2372 title=new_title, lang=xissue.lang, title_type="issue-title" 

2373 ) 

2374 

2375 if new_trans_title != "": 

2376 trans_lang = "fr" 

2377 title_xml = build_title_xml( 

2378 title=new_trans_title, lang=trans_lang, title_type="trans-title" 

2379 ) 

2380 title = create_titledata( 

2381 lang=trans_lang, type="main", title_html=new_trans_title, title_xml=title_xml 

2382 ) 

2383 issue.titles = [title] 

2384 

2385 xissue.year = new_year 

2386 xissue.volume = new_volume 

2387 xissue.number = new_number 

2388 xissue.last_modified_iso_8601_date_str = datetime.now().strftime("%Y-%m-%d %H:%M:%S") 

2389 

2390 cmd = ptf_cmds.addContainerPtfCmd({"xobj": xissue}) 

2391 cmd.add_collection(collection) 

2392 cmd.set_provider(model_helpers.get_provider_by_name("mathdoc")) 

2393 issue = cmd.do() 

2394 

2395 self.kwargs["pid"] = new_pid 

2396 

2397 # Add objects related to the article: contribs, datastream, counts... 

2398 params = { 

2399 "icon_location": new_icon_location, 

2400 } 

2401 cmd = ptf_cmds.updateContainerPtfCmd(params) 

2402 cmd.set_resource(issue) 

2403 cmd.do() 

2404 

2405 publisher = model_helpers.get_publisher(new_publisher) 

2406 if not publisher: 

2407 xpub = create_publisherdata() 

2408 xpub.name = new_publisher 

2409 publisher = ptf_cmds.addPublisherPtfCmd({"xobj": xpub}).do() 

2410 issue.my_publisher = publisher 

2411 issue.save() 

2412 

2413 self.set_success_message() 

2414 

2415 return super().form_valid(form) 

2416 

2417 

2418# class ArticleEditView(FormView): 

2419# template_name = 'article_form.html' 

2420# form_class = ArticleForm 

2421# 

2422# def get_success_url(self): 

2423# if self.kwargs['pid']: 

2424# return reverse('article', kwargs={'aid': self.kwargs['pid']}) 

2425# return reverse('mersenne_dashboard/published_articles') 

2426# 

2427# def set_success_message(self): # pylint: disable=no-self-use 

2428# messages.success(self.request, "L'article a été modifié") 

2429# 

2430# def get_form_kwargs(self): 

2431# kwargs = super(ArticleEditView, self).get_form_kwargs() 

2432# 

2433# if 'pid' not in self.kwargs or self.kwargs['pid'] == 'None': 

2434# # Article creation: pid is None 

2435# self.kwargs['pid'] = None 

2436# if 'issue_id' not in self.kwargs: 

2437# # Article edit: issue_id is not passed 

2438# self.kwargs['issue_id'] = None 

2439# if 'data' in kwargs and 'issue_id' in kwargs['data']: 

2440# # colid is passed as a hidden param in the form. 

2441# # It is used when you submit a new container 

2442# self.kwargs['issue_id'] = kwargs['data']['issue_id'] 

2443# 

2444# self.kwargs['article'] = kwargs['article'] = model_helpers.get_article(self.kwargs['pid']) 

2445# return kwargs 

2446# 

2447# def get_context_data(self, **kwargs): 

2448# context = super(ArticleEditView, self).get_context_data(**kwargs) 

2449# 

2450# context['pid'] = self.kwargs['pid'] 

2451# context['issue_id'] = self.kwargs['issue_id'] 

2452# context['article'] = self.kwargs['article'] 

2453# 

2454# context['edit_article'] = context['pid'] is not None 

2455# 

2456# article = context['article'] 

2457# if article: 

2458# context['author_contributions'] = article.get_author_contributions() 

2459# context['kwds_fr'] = None 

2460# context['kwds_en'] = None 

2461# kwd_gps = article.get_non_msc_kwds() 

2462# for kwd_gp in kwd_gps: 

2463# if kwd_gp.lang == 'fr' or (kwd_gp.lang == 'und' and article.lang == 'fr'): 

2464# if kwd_gp.value_xml: 

2465# kwd_ = types.SimpleNamespace() 

2466# kwd_.value = kwd_gp.value_tex 

2467# context['kwd_unstructured_fr'] = kwd_ 

2468# context['kwds_fr'] = kwd_gp.kwd_set.all() 

2469# elif kwd_gp.lang == 'en' or (kwd_gp.lang == 'und' and article.lang == 'en'): 

2470# if kwd_gp.value_xml: 

2471# kwd_ = types.SimpleNamespace() 

2472# kwd_.value = kwd_gp.value_tex 

2473# context['kwd_unstructured_en'] = kwd_ 

2474# context['kwds_en'] = kwd_gp.kwd_set.all() 

2475# 

2476# # Article creation: init pid 

2477# if context['issue_id'] and context['pid'] is None: 

2478# issue = model_helpers.get_container(context['issue_id']) 

2479# context['pid'] = issue.pid + '_A' + str(issue.article_set.count() + 1) + '_0' 

2480# 

2481# return context 

2482# 

2483# def form_valid(self, form): 

2484# 

2485# new_pid = form.cleaned_data.get('pid') 

2486# new_title = form.cleaned_data.get('title') 

2487# new_fpage = form.cleaned_data.get('fpage') 

2488# new_lpage = form.cleaned_data.get('lpage') 

2489# new_page_range = form.cleaned_data.get('page_range') 

2490# new_page_count = form.cleaned_data.get('page_count') 

2491# new_coi_statement = form.cleaned_data.get('coi_statement') 

2492# new_show_body = form.cleaned_data.get('show_body') 

2493# new_do_not_publish = form.cleaned_data.get('do_not_publish') 

2494# 

2495# # TODO support MathML 

2496# # 27/10/2020: title_xml embeds the trans_title_group in JATS. 

2497# # We need to pass trans_title to get_title_xml 

2498# # Meanwhile, ignore new_title_xml 

2499# new_title_xml = jats_parser.get_title_xml(new_title) 

2500# new_title_html = new_title 

2501# 

2502# authors_count = int(self.request.POST.get('authors_count', "0")) 

2503# i = 1 

2504# new_authors = [] 

2505# old_author_contributions = [] 

2506# if self.kwargs['article']: 

2507# old_author_contributions = self.kwargs['article'].get_author_contributions() 

2508# 

2509# while authors_count > 0: 

2510# prefix = self.request.POST.get('contrib-p-' + str(i), None) 

2511# 

2512# if prefix is not None: 

2513# addresses = [] 

2514# if len(old_author_contributions) >= i: 

2515# old_author_contribution = old_author_contributions[i - 1] 

2516# addresses = [contrib_address.address for contrib_address in 

2517# old_author_contribution.get_addresses()] 

2518# 

2519# first_name = self.request.POST.get('contrib-f-' + str(i), None) 

2520# last_name = self.request.POST.get('contrib-l-' + str(i), None) 

2521# suffix = self.request.POST.get('contrib-s-' + str(i), None) 

2522# orcid = self.request.POST.get('contrib-o-' + str(i), None) 

2523# deceased = self.request.POST.get('contrib-d-' + str(i), None) 

2524# deceased_before_publication = deceased == 'on' 

2525# equal_contrib = self.request.POST.get('contrib-e-' + str(i), None) 

2526# equal_contrib = equal_contrib == 'on' 

2527# corresponding = self.request.POST.get('corresponding-' + str(i), None) 

2528# corresponding = corresponding == 'on' 

2529# email = self.request.POST.get('email-' + str(i), None) 

2530# 

2531# params = jats_parser.get_name_params(first_name, last_name, prefix, suffix, orcid) 

2532# params['deceased_before_publication'] = deceased_before_publication 

2533# params['equal_contrib'] = equal_contrib 

2534# params['corresponding'] = corresponding 

2535# params['addresses'] = addresses 

2536# params['email'] = email 

2537# 

2538# params['contrib_xml'] = xml_utils.get_contrib_xml(params) 

2539# 

2540# new_authors.append(params) 

2541# 

2542# authors_count -= 1 

2543# i += 1 

2544# 

2545# kwds_fr_count = int(self.request.POST.get('kwds_fr_count', "0")) 

2546# i = 1 

2547# new_kwds_fr = [] 

2548# while kwds_fr_count > 0: 

2549# value = self.request.POST.get('kwd-fr-' + str(i), None) 

2550# new_kwds_fr.append(value) 

2551# kwds_fr_count -= 1 

2552# i += 1 

2553# new_kwd_uns_fr = self.request.POST.get('kwd-uns-fr-0', None) 

2554# 

2555# kwds_en_count = int(self.request.POST.get('kwds_en_count', "0")) 

2556# i = 1 

2557# new_kwds_en = [] 

2558# while kwds_en_count > 0: 

2559# value = self.request.POST.get('kwd-en-' + str(i), None) 

2560# new_kwds_en.append(value) 

2561# kwds_en_count -= 1 

2562# i += 1 

2563# new_kwd_uns_en = self.request.POST.get('kwd-uns-en-0', None) 

2564# 

2565# if self.kwargs['article']: 

2566# # Edit article 

2567# container = self.kwargs['article'].my_container 

2568# else: 

2569# # New article 

2570# container = model_helpers.get_container(self.kwargs['issue_id']) 

2571# 

2572# if container is None: 

2573# raise ValueError(self.kwargs['issue_id'] + " does not exist") 

2574# 

2575# collection = container.my_collection 

2576# 

2577# # Copy PDF file & extract full text 

2578# body = '' 

2579# pdf_filename = resolver.get_disk_location(settings.MERSENNE_TEST_DATA_FOLDER, 

2580# collection.pid, 

2581# "pdf", 

2582# container.pid, 

2583# new_pid, 

2584# True) 

2585# if 'pdf' in self.request.FILES: 

2586# with open(pdf_filename, 'wb+') as destination: 

2587# for chunk in self.request.FILES['pdf'].chunks(): 

2588# destination.write(chunk) 

2589# 

2590# # Extract full text from the PDF 

2591# body = utils.pdf_to_text(pdf_filename) 

2592# 

2593# # Icon 

2594# new_icon_location = '' 

2595# if 'icon' in self.request.FILES: 

2596# filename = os.path.basename(self.request.FILES['icon'].name) 

2597# file_extension = filename.split('.')[1] 

2598# 

2599# icon_filename = resolver.get_disk_location(settings.MERSENNE_TEST_DATA_FOLDER, 

2600# collection.pid, 

2601# file_extension, 

2602# container.pid, 

2603# new_pid, 

2604# True) 

2605# 

2606# with open(icon_filename, 'wb+') as destination: 

2607# for chunk in self.request.FILES['icon'].chunks(): 

2608# destination.write(chunk) 

2609# 

2610# folder = resolver.get_relative_folder(collection.pid, container.pid, new_pid) 

2611# new_icon_location = os.path.join(folder, new_pid + '.' + file_extension) 

2612# 

2613# if self.kwargs['article']: 

2614# # Edit article 

2615# article = self.kwargs['article'] 

2616# article.fpage = new_fpage 

2617# article.lpage = new_lpage 

2618# article.page_range = new_page_range 

2619# article.coi_statement = new_coi_statement 

2620# article.show_body = new_show_body 

2621# article.do_not_publish = new_do_not_publish 

2622# article.save() 

2623# 

2624# else: 

2625# # New article 

2626# params = { 

2627# 'pid': new_pid, 

2628# 'title_xml': new_title_xml, 

2629# 'title_html': new_title_html, 

2630# 'title_tex': new_title, 

2631# 'fpage': new_fpage, 

2632# 'lpage': new_lpage, 

2633# 'page_range': new_page_range, 

2634# 'seq': container.article_set.count() + 1, 

2635# 'body': body, 

2636# 'coi_statement': new_coi_statement, 

2637# 'show_body': new_show_body, 

2638# 'do_not_publish': new_do_not_publish 

2639# } 

2640# 

2641# xarticle = create_articledata() 

2642# xarticle.pid = new_pid 

2643# xarticle.title_xml = new_title_xml 

2644# xarticle.title_html = new_title_html 

2645# xarticle.title_tex = new_title 

2646# xarticle.fpage = new_fpage 

2647# xarticle.lpage = new_lpage 

2648# xarticle.page_range = new_page_range 

2649# xarticle.seq = container.article_set.count() + 1 

2650# xarticle.body = body 

2651# xarticle.coi_statement = new_coi_statement 

2652# params['xobj'] = xarticle 

2653# 

2654# cmd = ptf_cmds.addArticlePtfCmd(params) 

2655# cmd.set_container(container) 

2656# cmd.add_collection(container.my_collection) 

2657# article = cmd.do() 

2658# 

2659# self.kwargs['pid'] = new_pid 

2660# 

2661# # Add objects related to the article: contribs, datastream, counts... 

2662# params = { 

2663# # 'title_xml': new_title_xml, 

2664# # 'title_html': new_title_html, 

2665# # 'title_tex': new_title, 

2666# 'authors': new_authors, 

2667# 'page_count': new_page_count, 

2668# 'icon_location': new_icon_location, 

2669# 'body': body, 

2670# 'use_kwds': True, 

2671# 'kwds_fr': new_kwds_fr, 

2672# 'kwds_en': new_kwds_en, 

2673# 'kwd_uns_fr': new_kwd_uns_fr, 

2674# 'kwd_uns_en': new_kwd_uns_en 

2675# } 

2676# cmd = ptf_cmds.updateArticlePtfCmd(params) 

2677# cmd.set_article(article) 

2678# cmd.do() 

2679# 

2680# self.set_success_message() 

2681# 

2682# return super(ArticleEditView, self).form_valid(form) 

2683 

2684 

2685@require_http_methods(["POST"]) 

2686def do_not_publish_article(request, *args, **kwargs): 

2687 next = request.headers.get("referer") 

2688 

2689 pid = kwargs.get("pid", "") 

2690 

2691 article = model_helpers.get_article(pid) 

2692 if article: 

2693 article.do_not_publish = not article.do_not_publish 

2694 article.save() 

2695 else: 

2696 raise Http404 

2697 

2698 return HttpResponseRedirect(next) 

2699 

2700 

2701@require_http_methods(["POST"]) 

2702def show_article_body(request, *args, **kwargs): 

2703 next = request.headers.get("referer") 

2704 

2705 pid = kwargs.get("pid", "") 

2706 

2707 article = model_helpers.get_article(pid) 

2708 if article: 

2709 article.show_body = not article.show_body 

2710 article.save() 

2711 else: 

2712 raise Http404 

2713 

2714 return HttpResponseRedirect(next) 

2715 

2716 

2717class ArticleEditWithVueAPIView(CsrfExemptMixin, ArticleEditFormWithVueAPIView): 

2718 """ 

2719 API to get/post article metadata 

2720 The class is derived from ArticleEditFormWithVueAPIView (see ptf.views) 

2721 """ 

2722 

2723 def __init__(self, *args, **kwargs): 

2724 """ 

2725 we define here what fields we want in the form 

2726 when updating article, lang can change with an impact on xml for (trans_)abstracts and (trans_)title 

2727 so as we iterate on fields to update, lang fields shall be in first position if present in fields_to_update""" 

2728 super().__init__(*args, **kwargs) 

2729 self.fields_to_update = [ 

2730 "lang", 

2731 "atype", 

2732 "contributors", 

2733 "abstracts", 

2734 "kwds", 

2735 "titles", 

2736 "trans_title_html", 

2737 "title_html", 

2738 "title_xml", 

2739 "streams", 

2740 "ext_links", 

2741 "date_accepted", 

2742 "history_dates", 

2743 ] 

2744 # order between doi and pid is important as for pending article we need doi to create a temporary pid 

2745 self.additional_fields = ["doi", "pid", "container_pid", "pdf", "illustration", "dates"] 

2746 self.editorial_tools = [ 

2747 "translation", 

2748 "sidebar", 

2749 "lang_selection", 

2750 "back_to_article_option", 

2751 ] 

2752 self.article_container_pid = "" 

2753 self.back_url = "trammel" 

2754 

2755 def save_data(self, data_article): 

2756 # On sauvegarde les données additionnelles (extid, deployed_date,...) dans un json 

2757 # The icons are not preserved since we can add/edit/delete them in VueJs 

2758 params = { 

2759 "pid": data_article.pid, 

2760 "export_folder": settings.MERSENNE_TMP_FOLDER, 

2761 "export_all": True, 

2762 "with_binary_files": False, 

2763 } 

2764 ptf_cmds.exportExtraDataPtfCmd(params).do() 

2765 

2766 def restore_data(self, article): 

2767 ptf_cmds.importExtraDataPtfCmd( 

2768 { 

2769 "pid": article.pid, 

2770 "import_folder": settings.MERSENNE_TMP_FOLDER, 

2771 } 

2772 ).do() 

2773 

2774 def get(self, request, *args, **kwargs): 

2775 data = super().get(request, *args, **kwargs) 

2776 return data 

2777 

2778 def post(self, request, *args, **kwargs): 

2779 response = super().post(request, *args, **kwargs) 

2780 if response["message"] == "OK": 

2781 return redirect( 

2782 "api-edit-article", 

2783 colid=kwargs.get("colid", ""), 

2784 containerPid=kwargs.get("containerPid"), 

2785 doi=response["data"].doi, 

2786 ) 

2787 else: 

2788 raise Http404 

2789 

2790 

2791class ArticleEditWithVueView(LoginRequiredMixin, TemplateView): 

2792 template_name = "article_form.html" 

2793 

2794 def get_success_url(self): 

2795 if self.kwargs["doi"]: 

2796 return reverse("article", kwargs={"aid": self.kwargs["doi"]}) 

2797 return reverse("mersenne_dashboard/published_articles") 

2798 

2799 def get_context_data(self, **kwargs): 

2800 context = super().get_context_data(**kwargs) 

2801 if "doi" in self.kwargs: 

2802 context["article"] = model_helpers.get_article_by_doi(self.kwargs["doi"]) 

2803 context["pid"] = context["article"].pid 

2804 

2805 context["container_pid"] = kwargs.get("container_pid", "") 

2806 return context 

2807 

2808 

2809class ArticleDeleteView(View): 

2810 def get(self, request, *args, **kwargs): 

2811 pid = self.kwargs.get("pid", None) 

2812 article = get_object_or_404(Article, pid=pid) 

2813 

2814 try: 

2815 mersenneSite = model_helpers.get_site_mersenne(article.get_collection().pid) 

2816 article.undeploy(mersenneSite) 

2817 

2818 cmd = ptf_cmds.addArticlePtfCmd( 

2819 {"pid": article.pid, "to_folder": settings.MERSENNE_TEST_DATA_FOLDER} 

2820 ) 

2821 cmd.set_container(article.my_container) 

2822 cmd.set_object_to_be_deleted(article) 

2823 cmd.undo() 

2824 except Exception as exception: 

2825 return HttpResponseServerError(exception) 

2826 

2827 data = {"message": "L'article a bien été supprimé de ptf-tools", "status": 200} 

2828 return JsonResponse(data) 

2829 

2830 

2831def get_messages_in_queue(): 

2832 app = Celery("ptf-tools") 

2833 # tasks = list(current_app.tasks) 

2834 tasks = list(sorted(name for name in current_app.tasks if name.startswith("celery"))) 

2835 print(tasks) 

2836 # i = app.control.inspect() 

2837 

2838 with app.connection_or_acquire() as conn: 

2839 remaining = conn.default_channel.queue_declare( 

2840 queue="coordinator", passive=True 

2841 ).message_count 

2842 return remaining 

2843 

2844 

2845class NumdamView(TemplateView, history_views.HistoryContextMixin): 

2846 template_name = "numdam.html" 

2847 

2848 def get_context_data(self, **kwargs): 

2849 context = super().get_context_data(**kwargs) 

2850 

2851 context["objs"] = ResourceInNumdam.objects.all() 

2852 

2853 pre_issues = [] 

2854 prod_issues = [] 

2855 url = f"{settings.NUMDAM_PRE_URL}/api-all-issues/" 

2856 try: 

2857 response = requests.get(url) 

2858 if response.status_code == 200: 

2859 data = response.json() 

2860 if "issues" in data: 

2861 pre_issues = data["issues"] 

2862 except Exception: 

2863 pass 

2864 

2865 url = f"{settings.NUMDAM_URL}/api-all-issues/" 

2866 response = requests.get(url) 

2867 if response.status_code == 200: 

2868 data = response.json() 

2869 if "issues" in data: 

2870 prod_issues = data["issues"] 

2871 

2872 new = sorted(list(set(pre_issues).difference(prod_issues))) 

2873 removed = sorted(list(set(prod_issues).difference(pre_issues))) 

2874 grouped = [ 

2875 {"colid": k, "issues": list(g)} for k, g in groupby(new, lambda x: x.split("_")[0]) 

2876 ] 

2877 grouped_removed = [ 

2878 {"colid": k, "issues": list(g)} for k, g in groupby(removed, lambda x: x.split("_")[0]) 

2879 ] 

2880 context["added_issues"] = grouped 

2881 context["removed_issues"] = grouped_removed 

2882 

2883 context["numdam_collections"] = settings.NUMDAM_COLLECTIONS 

2884 return context 

2885 

2886 

2887class NumdamArchiveView(RedirectView): 

2888 @staticmethod 

2889 def reset_task_results(): 

2890 TaskResult.objects.all().delete() 

2891 

2892 def get_redirect_url(self, *args, **kwargs): 

2893 self.colid = kwargs["colid"] 

2894 

2895 if self.colid != "ALL" and self.colid in settings.MERSENNE_COLLECTIONS: 

2896 return Http404 

2897 

2898 # we make sure archiving is not already running 

2899 # if not get_messages_in_queue(): 

2900 # self.reset_task_results() 

2901 

2902 if self.colid == "ALL": 

2903 archive_numdam_collections.delay() 

2904 else: 

2905 archive_numdam_collection.s(self.colid).delay() 

2906 

2907 return reverse("numdam") 

2908 

2909 

2910class DeployAllNumdamAPIView(View): 

2911 def internal_do(self, *args, **kwargs): 

2912 pids = [] 

2913 

2914 for obj in ResourceInNumdam.objects.all(): 

2915 pids.append(obj.pid) 

2916 

2917 return pids 

2918 

2919 def get(self, request, *args, **kwargs): 

2920 try: 

2921 pids, status, message = history_views.execute_and_record_func( 

2922 "deploy", "numdam", "ALL", self.internal_do, "numdam" 

2923 ) 

2924 except Exception as exception: 

2925 return HttpResponseServerError(exception) 

2926 

2927 data = {"message": message, "ids": pids, "status": status} 

2928 return JsonResponse(data) 

2929 

2930 

2931class NumdamDeleteAPIView(View): 

2932 def get(self, request, *args, **kwargs): 

2933 pid = self.kwargs.get("pid", None) 

2934 

2935 try: 

2936 obj = ResourceInNumdam.objects.get(pid=pid) 

2937 obj.delete() 

2938 except Exception as exception: 

2939 return HttpResponseServerError(exception) 

2940 

2941 data = {"message": "Le volume a bien été supprimé de la liste pour Numdam", "status": 200} 

2942 return JsonResponse(data) 

2943 

2944 

2945class ExtIdApiDetail(View): 

2946 def get(self, request, *args, **kwargs): 

2947 extid = get_object_or_404( 

2948 ExtId, 

2949 resource__pid=kwargs["pid"], 

2950 id_type=kwargs["what"], 

2951 ) 

2952 return JsonResponse( 

2953 { 

2954 "pk": extid.pk, 

2955 "href": extid.get_href(), 

2956 "fetch": reverse( 

2957 "api-fetch-id", 

2958 args=( 

2959 extid.resource.pk, 

2960 extid.id_value, 

2961 extid.id_type, 

2962 "extid", 

2963 ), 

2964 ), 

2965 "check": reverse("update-extid", args=(extid.pk, "toggle-checked")), 

2966 "uncheck": reverse("update-extid", args=(extid.pk, "toggle-false-positive")), 

2967 "update": reverse("extid-update", kwargs={"pk": extid.pk}), 

2968 "delete": reverse("update-extid", args=(extid.pk, "delete")), 

2969 "is_valid": extid.checked, 

2970 } 

2971 ) 

2972 

2973 

2974class ExtIdFormTemplate(TemplateView): 

2975 template_name = "common/externalid_form.html" 

2976 

2977 def get_context_data(self, **kwargs): 

2978 context = super().get_context_data(**kwargs) 

2979 context["sequence"] = kwargs["sequence"] 

2980 return context 

2981 

2982 

2983class BibItemIdFormView(LoginRequiredMixin, StaffuserRequiredMixin, View): 

2984 def get_context_data(self, **kwargs): 

2985 context = super().get_context_data(**kwargs) 

2986 context["helper"] = PtfFormHelper 

2987 return context 

2988 

2989 def get_success_url(self): 

2990 self.post_process() 

2991 return self.object.bibitem.resource.get_absolute_url() 

2992 

2993 def post_process(self): 

2994 cmd = updateBibitemCitationXmlCmd() 

2995 cmd.set_bibitem(self.object.bibitem) 

2996 cmd.do() 

2997 model_helpers.post_resource_updated(self.object.bibitem.resource) 

2998 

2999 

3000class BibItemIdCreate(BibItemIdFormView, CreateView): 

3001 model = BibItemId 

3002 form_class = BibItemIdForm 

3003 

3004 def get_context_data(self, **kwargs): 

3005 context = super().get_context_data(**kwargs) 

3006 context["bibitem"] = BibItem.objects.get(pk=self.kwargs["bibitem_pk"]) 

3007 return context 

3008 

3009 def get_initial(self): 

3010 initial = super().get_initial() 

3011 initial["bibitem"] = BibItem.objects.get(pk=self.kwargs["bibitem_pk"]) 

3012 return initial 

3013 

3014 def form_valid(self, form): 

3015 form.instance.checked = False 

3016 return super().form_valid(form) 

3017 

3018 

3019class BibItemIdUpdate(BibItemIdFormView, UpdateView): 

3020 model = BibItemId 

3021 form_class = BibItemIdForm 

3022 

3023 def get_context_data(self, **kwargs): 

3024 context = super().get_context_data(**kwargs) 

3025 context["bibitem"] = self.object.bibitem 

3026 return context 

3027 

3028 

3029class ExtIdFormView(LoginRequiredMixin, StaffuserRequiredMixin, View): 

3030 def get_context_data(self, **kwargs): 

3031 context = super().get_context_data(**kwargs) 

3032 context["helper"] = PtfFormHelper 

3033 return context 

3034 

3035 def get_success_url(self): 

3036 self.post_process() 

3037 return self.object.resource.get_absolute_url() 

3038 

3039 def post_process(self): 

3040 model_helpers.post_resource_updated(self.object.resource) 

3041 

3042 

3043class ExtIdCreate(ExtIdFormView, CreateView): 

3044 model = ExtId 

3045 form_class = ExtIdForm 

3046 

3047 def get_context_data(self, **kwargs): 

3048 context = super().get_context_data(**kwargs) 

3049 context["resource"] = Resource.objects.get(pk=self.kwargs["resource_pk"]) 

3050 return context 

3051 

3052 def get_initial(self): 

3053 initial = super().get_initial() 

3054 initial["resource"] = Resource.objects.get(pk=self.kwargs["resource_pk"]) 

3055 return initial 

3056 

3057 def form_valid(self, form): 

3058 form.instance.checked = False 

3059 return super().form_valid(form) 

3060 

3061 

3062class ExtIdUpdate(ExtIdFormView, UpdateView): 

3063 model = ExtId 

3064 form_class = ExtIdForm 

3065 

3066 def get_context_data(self, **kwargs): 

3067 context = super().get_context_data(**kwargs) 

3068 context["resource"] = self.object.resource 

3069 return context 

3070 

3071 

3072class BibItemIdApiDetail(View): 

3073 def get(self, request, *args, **kwargs): 

3074 bibitemid = get_object_or_404( 

3075 BibItemId, 

3076 bibitem__resource__pid=kwargs["pid"], 

3077 bibitem__sequence=kwargs["seq"], 

3078 id_type=kwargs["what"], 

3079 ) 

3080 return JsonResponse( 

3081 { 

3082 "pk": bibitemid.pk, 

3083 "href": bibitemid.get_href(), 

3084 "fetch": reverse( 

3085 "api-fetch-id", 

3086 args=( 

3087 bibitemid.bibitem.pk, 

3088 bibitemid.id_value, 

3089 bibitemid.id_type, 

3090 "bibitemid", 

3091 ), 

3092 ), 

3093 "check": reverse("update-bibitemid", args=(bibitemid.pk, "toggle-checked")), 

3094 "uncheck": reverse( 

3095 "update-bibitemid", args=(bibitemid.pk, "toggle-false-positive") 

3096 ), 

3097 "update": reverse("bibitemid-update", kwargs={"pk": bibitemid.pk}), 

3098 "delete": reverse("update-bibitemid", args=(bibitemid.pk, "delete")), 

3099 "is_valid": bibitemid.checked, 

3100 } 

3101 ) 

3102 

3103 

3104class UpdateTexmfZipAPIView(View): 

3105 def get(self, request, *args, **kwargs): 

3106 def copy_zip_files(src_folder, dest_folder): 

3107 os.makedirs(dest_folder, exist_ok=True) 

3108 

3109 zip_files = [ 

3110 os.path.join(src_folder, f) 

3111 for f in os.listdir(src_folder) 

3112 if os.path.isfile(os.path.join(src_folder, f)) and f.endswith(".zip") 

3113 ] 

3114 for zip_file in zip_files: 

3115 resolver.copy_file(zip_file, dest_folder) 

3116 

3117 # Exceptions: specific zip/gz files 

3118 zip_file = os.path.join(src_folder, "texmf-bsmf.zip") 

3119 resolver.copy_file(zip_file, dest_folder) 

3120 

3121 zip_file = os.path.join(src_folder, "texmf-cg.zip") 

3122 resolver.copy_file(zip_file, dest_folder) 

3123 

3124 gz_file = os.path.join(src_folder, "texmf-mersenne.tar.gz") 

3125 resolver.copy_file(gz_file, dest_folder) 

3126 

3127 src_folder = settings.CEDRAM_DISTRIB_FOLDER 

3128 

3129 dest_folder = os.path.join( 

3130 settings.MERSENNE_TEST_DATA_FOLDER, "MERSENNE", "media", "texmf" 

3131 ) 

3132 

3133 try: 

3134 copy_zip_files(src_folder, dest_folder) 

3135 except Exception as exception: 

3136 return HttpResponseServerError(exception) 

3137 

3138 try: 

3139 dest_folder = os.path.join( 

3140 settings.MERSENNE_PROD_DATA_FOLDER, "MERSENNE", "media", "texmf" 

3141 ) 

3142 copy_zip_files(src_folder, dest_folder) 

3143 except Exception as exception: 

3144 return HttpResponseServerError(exception) 

3145 

3146 data = {"message": "Les texmf*.zip ont bien été mis à jour", "status": 200} 

3147 return JsonResponse(data) 

3148 

3149 

3150class TestView(TemplateView): 

3151 template_name = "mersenne.html" 

3152 

3153 def get_context_data(self, **kwargs): 

3154 super().get_context_data(**kwargs) 

3155 issue = model_helpers.get_container(pid="CRPHYS_0__0_0", prefetch=True) 

3156 model_data_converter.db_to_issue_data(issue) 

3157 

3158 

3159class TrammelTasksProgressView(View): 

3160 def get(self, request, task: str = "archive_numdam_issue", *args, **kwargs): 

3161 """ 

3162 Return a JSON object with the progress of the archiving task Le code permet de récupérer l'état d'avancement 

3163 de la tache celery (archive_trammel_resource) en SSE (Server-Sent Events) 

3164 """ 

3165 task_name = task 

3166 

3167 def get_event_data(): 

3168 # Tasks are typically in the CREATED then SUCCESS or FAILURE state 

3169 

3170 # Some messages (in case of many call to <task>.delay) have not been converted to TaskResult yet 

3171 remaining_messages = get_messages_in_queue() 

3172 

3173 all_tasks = TaskResult.objects.filter(task_name=f"ptf_tools.tasks.{task_name}") 

3174 successed_tasks = all_tasks.filter(status="SUCCESS").order_by("-date_done") 

3175 failed_tasks = all_tasks.filter(status="FAILURE") 

3176 

3177 all_tasks_count = all_tasks.count() 

3178 success_count = successed_tasks.count() 

3179 fail_count = failed_tasks.count() 

3180 

3181 all_count = all_tasks_count + remaining_messages 

3182 remaining_count = all_count - success_count - fail_count 

3183 

3184 success_rate = int(success_count * 100 / all_count) if all_count else 0 

3185 error_rate = int(fail_count * 100 / all_count) if all_count else 0 

3186 status = "consuming_queue" if remaining_count != 0 else "polling" 

3187 

3188 last_task = successed_tasks.first() 

3189 last_task = ( 

3190 " : ".join([last_task.date_done.strftime("%Y-%m-%d"), last_task.task_args]) 

3191 if last_task 

3192 else "" 

3193 ) 

3194 

3195 # SSE event format 

3196 event_data = { 

3197 "status": status, 

3198 "success_rate": success_rate, 

3199 "error_rate": error_rate, 

3200 "all_count": all_count, 

3201 "remaining_count": remaining_count, 

3202 "success_count": success_count, 

3203 "fail_count": fail_count, 

3204 "last_task": last_task, 

3205 } 

3206 

3207 return event_data 

3208 

3209 def stream_response(data): 

3210 # Send initial response headers 

3211 yield f"data: {json.dumps(data)}\n\n" 

3212 

3213 data = get_event_data() 

3214 format = request.GET.get("format", "stream") 

3215 if format == "json": 

3216 response = JsonResponse(data) 

3217 else: 

3218 response = HttpResponse(stream_response(data), content_type="text/event-stream") 

3219 return response 

3220 

3221 

3222user_signed_up.connect(update_user_from_invite)